FMO07267.5prime Sequence
1190 bp (1047 high quality bases) assembled on 2008-10-06
> FMO07267.5prime
CAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGCAGTTCAAC
TCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACATTGAACCG
CGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGATCAAATAA
CGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCGTCGAAGAG
GAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGGCCACCGGC
CTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCAGACTCAGA
GTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACGCTCCCACA
GCAGCAGCTGCCGCTCCACCTCAGGGTCCCATTTATAACAACGTCCAGCC
ACGCACCACCCAAACACCACAAAATGCCTACCCATCGGCACCACAAACCA
CCAGCACCGCCTACCCCACCAACCAGTACCCAGATAGTTATTCGCATCAG
GAGCAGCAGCAGCAACAGCAGCAACAGCAGCCTGTGCAGTACACACAGGC
GCAGTTCGGTCGGCAACGCTCGAGGGAACCCGTCCAGGTTTCAGCTCCAT
CTCCAGCTCCCGCAACCGATCCCAGCGGTTATCCATACCAGGCTAACTAT
CAGTCCAACTATCCGCAGGAGCCGCTGCAGGCAGTGAACAATGTGGGTGG
TGGCTGGAAACACATTGGTGCTCCGCAGCCTAAGTCACGCAGTGAATTCA
CCGCCGGCAATGGAGCCTATCCCCCGTTCCAGGGATCCTACCAGCAGCAA
CAACAGCAGCCGCAGCAGCAGTACGGTGCTCCGTCTTACGATGGCCAGCA
GCCTGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCAGGTTCCGCAGCA
GGCAGTATCAGCCTCAATCGCAGCTCAGCGCCTATCAGCCACCACAGTGA
ACAGCCGCAGCAGCAGCAGCAGCAGCATCGTACAGCTTCACGTACACAGC
AGCACAGCAACAGCATCTATTACCCCAGCAATGGTGGCTCGACTATGCTC
ACCCCATACATTCTAATTCCAGCCGTGGCCTACTCGCAGGATCGACTGAT
CTGCAGCAGCATCACACGCAGGCATGCAGGTATCCGGGAATCTAGCCTGC
AGGATGCTTCGTGGGCCCGTTCCGCATATCACCTCAGTGC
FMO07267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RJ | 3076 | CG43897-RJ | 243..1372 | 9..1111 | 4950 | 97.3 | Plus |
| CG43897-RC | 3497 | CG43897-RC | 664..1793 | 9..1111 | 4950 | 97.3 | Plus |
| CG43897-RB | 3240 | CG43897-RB | 407..1536 | 9..1111 | 4950 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9830996..9831440 | 371..815 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830786 | 222..375 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 9..128 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9832195..9832364 | 812..976 | 530 | 94.2 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 127..223 | 485 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6941 | 789..1017 | 327 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6923 | 790..973 | 305 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2527 | 790..1030 | 291 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2563 | 790..1029 | 276 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2832 | 454..976 | 218 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..7057 | 790..1034 | 213 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6944 | 790..976 | 212 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2999 | 790..1002 | 210 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2614 | 790..1018 | 198 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1044..1162 | 777..901 | 153 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1146 | 790..823 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 788..819 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 792..820 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1546 | 791..820 | 114 | 86.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 935..1037 | 735..836 | 114 | 64.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..176 | 788..813 | 112 | 92.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9206 | 788..813 | 112 | 92.3 | Plus |
FMO07267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:04 Download gff for
FMO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 399..1548 | 1..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:06 Download gff for
FMO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 648..1797 | 1..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:59 Download gff for
FMO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 399..1548 | 1..1124 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:59 Download gff for
FMO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9824546..9824640 | 128..222 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 223..374 | 100 | -> | Plus |
| 3L | 9820433..9820559 | 1..127 | 96 | -> | Plus |
| 3L | 9831000..9831440 | 375..815 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:04 Download gff for
FMO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9817646..9817740 | 128..222 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 223..374 | 100 | -> | Plus |
| arm_3L | 9813533..9813659 | 1..127 | 96 | -> | Plus |
| arm_3L | 9824100..9824540 | 375..815 | 100 | -> | Plus |
