FMO07269.5prime Sequence
1192 bp (1000 high quality bases) assembled on 2008-10-06
> FMO07269.5prime
CAGTCGACATGAAAATGATCGGCAGCGACTACGTACTGGAAGCCCACAAC
ATTTTCCACACCACCGAGGTGGATGGTGGTGGCTGTTTCAATGGAGCCGG
CAATTCGGCCCTGGTGCTCAAAGGCGTCAATCTAACCGTGCACAGCGGCG
AGGTTATGGCCATTCTGGGCTCGAAGGGTAGCGGCAAGAGAGCTCTTTTA
GATGTTATTTCTAGACGTGCCGATGGAGCAACTCGTGGTCAGGTGCTACT
CAATGGATCTCCGCTCTCCAAGGCATTGTTCCAACAGAGATGTGGCTATG
TCACCCAATCCTGCACCTTTGTTCCTGGTCTAACGGTGGCCCAAACACTA
CACTATACCCCCACTATATTGAGTGGCTATCTGAAGAGTTCCAAAGTGCG
CCAAGTGCTGGCGGATTTGGCCCTTTCCCAAGTGGCGCATAAGAGAGTGG
AGTATCTTAATATCAGTGAGGCACGGCGTCTGGCTATTGGAATACAGTTG
GTCAGAGATCCTGTCATGCTATTGCTGGATGAGCCGACCCATGGCCTCGA
TCCCTTGAGTGCCTATCTGCTGATATCCATTTTGTCCAACACGGCCAAGA
AGACGGGCTGTGGAATTCTTCTGTCGCTGGAGAAACCTCGCTCCGATGTG
TTCCCATTCCTGGATAGAGCCCTATTCCTCTGCCTGGGCGGAGTGGTCTA
TTCAGGAGGCACTCGTGCCATGCTGGAGTACTTTCATGGCATCGGATTCC
CTTGTCCACAGCTCGAGAATCCCTTGATGTACTATCTCTGCCTGTCCACT
GTGGATCGTCGCAGTCGGGATCGATTCCTGCAGTCTAGCCAGCAGATCGA
GGCGCTGGTGGAACGTTTCTCTCGGGAAACACCGATCTCGGATGCCCCTC
TAAACAACATGGGTTCTGGGAAAGTGCTCTGGCCTATGGAAGCCTGAAAG
CTCAAAGTTGGGTTATGCTGTATCTGAACTATACATCAATCTTCTCCTGT
GACTCGTGTATGAGACCTATTTCTGCCCTTTGCTACTCCATGACTTAAGC
ATCTATGGGAATTAACGATGTCGGTACGATCATGAATCTAAAGACGCATG
ATCCTTAATTTGGGCTGTCTACGTGTGGAAATGAATCAGTCTTATCCGAT
GGCCAAAATCGAGAATCCGAGGTCTATGCGGACACCTCATAG
FMO07269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11069-RA | 2038 | CG11069-RA | 143..1215 | 9..1063 | 4835 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24895885..24896352 | 513..976 | 2110 | 98.7 | Plus |
| 3R | 32079331 | 3R | 24895415..24895612 | 177..374 | 975 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24895686..24895830 | 369..513 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 24895244..24895357 | 67..180 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 24895112..24895173 | 9..70 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:00 has no hits.
FMO07269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:50 Download gff for
FMO07269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11069-RA | 135..1116 | 1..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:12 Download gff for
FMO07269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11069-RA | 133..1114 | 1..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:49 Download gff for
FMO07269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11069-RA | 135..1116 | 1..978 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:49 Download gff for
FMO07269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24895104..24895171 | 1..68 | 94 | -> | Plus |
| 3R | 24895246..24895354 | 69..177 | 100 | -> | Plus |
| 3R | 24895416..24895606 | 178..368 | 100 | -> | Plus |
| 3R | 24895686..24895830 | 369..513 | 100 | -> | Plus |
| 3R | 24895886..24896351 | 514..975 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:50 Download gff for
FMO07269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20720826..20720893 | 1..68 | 94 | -> | Plus |
| arm_3R | 20720968..20721076 | 69..177 | 100 | -> | Plus |
| arm_3R | 20721138..20721328 | 178..368 | 100 | -> | Plus |
| arm_3R | 20721408..20721552 | 369..513 | 100 | -> | Plus |
| arm_3R | 20721608..20722073 | 514..975 | 98 | -> | Plus |
