FMO07270.5prime Sequence
1236 bp (931 high quality bases) assembled on 2008-10-06
> FMO07270.5prime
CAGTCGACATGATCCGCATCCGATTTGGAATGGATGTGCTGCTAGTTTTG
CTACTTGCCACATGCCTGCTGACCCCTGCACATGGAACGCCACTGGAGTG
GGACTTTGCCGTCACGCTGAGGACGAAGATCCAGTTCATGGACAGTTCCT
GGCAGACGATAGCCACCGCCGCCCATGAGTTCGACGAGCTGTCCGCCCTG
ACCTTTGATGAGTCGGAGGAGCTGATCTACTTCAATGACCTGAAGCACCG
CAATGGCAGCATATTCTCCCTGAAACGGGATCTCATTGCCGCCAACCACG
TGGCGGAGCAAACGATCGCACGCACGGGTAATGAGTCGGTGGGAGGACTA
GCCTACGACCCACTGAACATGAACCTCTTCTGGTCGGACACCGAGCAGAG
AAAGATCTTCTTTGCACCCATTCACGGCTCTGCGACGCCCCAGGTTCTGG
TGGATCTGAGCGCGGAGGGTGGACGACCAGATGGCGTGGCAGTCGATGTG
TGCCGCCGCAAGCTGTACTGGACGAACTCGAACGTCACGCATCCCACTGT
GGAGAGGATCAATCTGGATGGCAGCAATAGGACCGTGATCATCAGCTCCA
ACATCGATATGCCCAGGGGAATCGTGGTGGATCAGCTGTCGGATCGCCTC
TTCTGGATTGACGACCTGAAGGGCGTGTTCTTCTCGGTAGAGAGCTCCAA
ACTGGACGGTTCCGATCGTCAGGTGGTGCTGAAAGACAGCACCATGAGCC
CCTCAACCTGGCCGTGACCAACGATGCCATCTACTGGACGGATCGTACTA
CCAGGGCCGGTTTGGAGTCACCCGAAAGTGCCGGTGATCAAGGTTACCAC
CACTAGCAAGCCAGACGAGGAGGATTCCCTGATTCCACGGACTTCAAGGA
CCCGAGCCGTGGCCGAGGACTGTCCGCTGGTGCGCGTTGCCATTCTTAGC
GAGGAAGCGCGAGGAATTGGGGCCGCACGGCTTCTACCAGAGACTGCAAA
ATGACCACATTGCTTCAGCATGTGCGAAGTGGAAGGGACGCTGGACAAGC
AAGCAGAAGTTGAAATACCCTGACTGTCTGGACCAGAATATAATGTGGCT
CGCAAACTAGCGTTCAGTAACCACGGCGAATTAGGCTCTGTCACGAATTT
GTGTGAACCTGGCCCACTGTTTTAAGGATCGGGTCGATCCGAGTCAACAA
TCTGTTGCCTCTCGGCAGGTCAAGATACTGTCGAAC
FMO07270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 266..1398 | 9..1129 | 4915 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1504882..1505793 | 1008..102 | 4140 | 98.7 | Minus |
| 3L | 28110227 | 3L | 1516913..1517006 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:59 has no hits.
FMO07270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:11 Download gff for
FMO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 259..1284 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:07 Download gff for
FMO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 226..1251 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:40 Download gff for
FMO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 259..1284 | 1..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:40 Download gff for
FMO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1504868..1505792 | 103..1021 | 98 | <- | Minus |
| 3L | 1516913..1517013 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:11 Download gff for
FMO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1504868..1505792 | 103..1021 | 98 | <- | Minus |
| arm_3L | 1516913..1517013 | 1..102 | 96 | | Minus |
