FMO07271.5prime Sequence
1196 bp (997 high quality bases) assembled on 2008-10-06
> FMO07271.5prime
CAGTCGACATGTCTGCGAAGACTTCGGTGTGGCTGGTGTTCTTTTGCGCC
CTCGGCTGCCTGATTCACGATGCCGATTTGCGGAGTATTCAACCAAAAGC
ATCCCAGTGCGGCTATCAGAGCTGCCATCCAACCAAACCCAACATGTTGA
ACGTGCACCTGGTGGCCCACACACATGACGATGTGGGATGGCTGAAGACC
GTTGACCAATACTACTATGGCAGCGAGACCAAGATCCAAAAGGCTGGAGT
CCAGTACATAATCGATTCGGTTGTGGAGGCTCTGCTCAGGGATCCCGAGA
AGCGTTTCATCTATGTGGAATCTGCCTTCTTCTTCAAGTGGTGGAAGGAG
CAGAAGCCCAAGGTCCAGGAGGCAGTAAAGATGCTGGTGGAGCAGGGAAG
ACTCGAATTTATTGGCGGCGCCTGGAGCATGAATGACGAGGCCACCACCC
ATTACCAGAGTGTGATTGATCAGTTCTCCTGGGGATTGAGACTTTTGAAT
GATACCTTTGGTGAGTGCGGACGTCCGCGTGTTGGATGGCAAATAGATCC
CTTTGGTCATTCCCGTGAAATGGCATCCATGTTTGCGCAAATGGGTTTCG
ATGGCATGTTCTTCGGTAGACTGGACTACCAGGATAAGGACGAGCGTCTG
ATGACCAAAAATGCAGAGATGATATGGCATGGATCAGCGAATTTGGGAGA
GGAAGCGGATCTGTTCAGTGGCGCCCTCTACAACAACTACCAGGCACCAG
ATGGCTTCTGCTTCGATATCCTATGCAACGATGCACCCATAATCGATGGC
AAACACAGTCCCGACAATAATGTTAAAGAGCGCATCGATACGTTTTTGGA
TTTCGCCAAGACCCAATCGCATACTACCGCACCAACATATCATTGTCACA
ATGGGCGGTGATTTTACATACCAGGCTGCTCAAGTTACTATAAGACCTCG
ACAGTTGATACGAATTGCAATGAACGCCAGCCAATGGGTTCGATATCATC
TTCATACCTCCACTCCATCGTGCTATCCTGAAATCCCTGCCGATGCCGGT
ATCACCTTGCCACCAAGGAGCGACGACTCTTCATACGCTTCCGATCCTAT
GCCTATCTGGACGAATTCCACTCCGGACCCACCTTGAGCATCGAACGGAA
TGCAATACTATTTCCTGCGAGGTCTCGCACAGAAGTATAGTGGCTG
FMO07271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LM408-RA | 3499 | CG6206-RA | 195..1377 | 9..1175 | 5070 | 96.6 | Plus |
| LM408-RB | 3499 | CG6206-RB | 195..1019 | 9..833 | 4125 | 100 | Plus |
| LM408-RB | 3499 | CG6206-RB | 1159..1377 | 967..1175 | 415 | 85.4 | Plus |
| CG9466-RB | 3074 | CG9466-RB | 152..642 | 123..613 | 380 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10458444..10458818 | 116..490 | 1875 | 100 | Plus |
| 2L | 23513712 | 2L | 10458878..10459086 | 489..697 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 10459139..10459280 | 692..833 | 695 | 99.3 | Plus |
| 2L | 23513712 | 2L | 10457852..10457962 | 9..119 | 555 | 100 | Plus |
| 2L | 23513712 | 2L | 10459384..10459488 | 834..936 | 425 | 98.1 | Plus |
| 2L | 23513712 | 2L | 8775820..8776050 | 353..123 | 270 | 74.5 | Minus |
| 2L | 23513712 | 2L | 10455646..10455836 | 320..130 | 220 | 74.3 | Minus |
| 2L | 23513712 | 2L | 10455321..10455414 | 594..501 | 215 | 81.9 | Minus |
| 2L | 23513712 | 2L | 10459885..10460021 | 967..1098 | 215 | 85.5 | Plus |
| 2L | 23513712 | 2L | 8775501..8775615 | 613..499 | 215 | 79.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:24 has no hits.
FMO07271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:21 Download gff for
FMO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LM408-RA | 188..1361 | 1..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:52 Download gff for
FMO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6206-RA | 190..1363 | 1..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:26 Download gff for
FMO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LM408-RA | 188..1361 | 1..1156 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:26 Download gff for
FMO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10457845..10457962 | 1..119 | 96 | -> | Plus |
| 2L | 10458448..10458818 | 120..490 | 100 | -> | Plus |
| 2L | 10458880..10459085 | 491..696 | 100 | -> | Plus |
| 2L | 10459144..10459280 | 697..833 | 100 | -> | Plus |
| 2L | 10459384..10459517 | 834..962 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:21 Download gff for
FMO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10457845..10457962 | 1..119 | 96 | -> | Plus |
| arm_2L | 10458448..10458818 | 120..490 | 100 | -> | Plus |
| arm_2L | 10458880..10459085 | 491..696 | 100 | -> | Plus |
| arm_2L | 10459144..10459280 | 697..833 | 100 | -> | Plus |
| arm_2L | 10459384..10459517 | 834..962 | 96 | -> | Plus |
