FMO07273.5prime Sequence
1172 bp (1021 high quality bases) assembled on 2008-10-06
> FMO07273.5prime
CAGTCGACATGGAGTGCAATCTGGGCAGCGAGATTGGTCAGAAGATGCGC
AGCGCCGTAAAGGCAAAGCTGCTGGAGCTGGGAACCGGAGGATCGGCCGG
TTTTATAGACGATGAATTGCCGGACTACGTCATGGTCATGGTGGCCAACA
AGCGCACCAAACAGCAGATGAACGCCGAGCTGAATCTATTCCTAGGCGAT
CAAACTGACCTCTTTGTCACCTGGCTGCACGAAGTGCTGCAAAAGCTCCA
AGAGGTCACACTCCCCACATCCAGTGCTTCCAGCAAGAAGCGCAAGTCTC
GCGGTCAGGAGAAGGACAAAAAAGGATCCAAGAAGGATAAGCGACCGCAC
CGAAAGTCCGGAGATGAGCTGTCGGAACCACAGCCAAGTTCCTCAGATGC
CATGCCAATTGTCAGTTCCATCACGGATGTTTTTGCCGAAGAGCTTCTCG
AGAAGGCAAAGAAAACCATGGACATTGATCTCAGTGCCAAAGACGAGATC
CTGCACAAAAAGAAAAATCGCAAGTCCATCGAGGATGAGGATGCATCGGC
CAATAGGGCGCTGGATGTGCCCGCTGTGTCTGAGATCATCTCAACTACTA
TCGGTGTTAACCGGCAAAAAGACCTCGCTGAGCTGGCCGAAATCCAAAAG
AAAATTCATGCAGCCAAGAAGCATTTACGCCAGATTGGCGAGATCGGGGA
TGAAAGCGATGAATATGATGAGGATCTGTTGAACTTGAGCGCGAGGGAGG
AGTCTGTAGACCAGGAGCCAGAAGAGGATCCCCCGAAATTGGAGGCTCCA
CCACGAAAAGCTAAGAGCCCCATTATTTTTAACAGACGCGAGAAGACACC
CGAAAAGCGTCCAGAGGCTGAACCGGAGATCGATTCCCGCCAGGAGGAGC
GGAGGAGAGAGCCCCAAAAGATTCTTCGGCTGACAGGCCAGGAGACCGGT
CTGAAAGCGATCGTGCATGACCGTCTCGGTTCAAGCCCAAACGCGCGATC
GTTCGCAGCGCACAAAGGAGCTCTATGTGCGACCCATCGCACGGACGACC
GAGCACAGAGGCAGTCAGAAGGCACCCGAACGACGCTCAGCCGCGATACC
TCTAGGAACTACCGTATCAGGCAGGTCGTTCCTATTCCGGAGCCTTCAGG
TCAAAGCACCGCATGTCTCTCA
FMO07273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nab2-RA | 3490 | CG5720-RA | 162..1371 | 7..1169 | 4910 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24317125..24317842 | 984..276 | 3195 | 98.6 | Minus |
| 3R | 32079331 | 3R | 24317896..24318121 | 276..51 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 24318215..24318258 | 50..7 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:56 has no hits.
FMO07273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:58 Download gff for
FMO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nab2-RA | 156..1202 | 1..1030 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:16 Download gff for
FMO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5720-RA | 157..1203 | 1..1030 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:39 Download gff for
FMO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nab2-RA | 156..1202 | 1..1030 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:39 Download gff for
FMO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24317071..24317841 | 277..1030 | 97 | <- | Minus |
| 3R | 24317896..24318121 | 51..276 | 100 | <- | Minus |
| 3R | 24318215..24318264 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:58 Download gff for
FMO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20142793..20143563 | 277..1030 | 97 | <- | Minus |
| arm_3R | 20143618..20143843 | 51..276 | 100 | <- | Minus |
| arm_3R | 20143937..20143986 | 1..50 | 94 | | Minus |
