FMO07274.5prime Sequence
1193 bp (1040 high quality bases) assembled on 2008-10-06
> FMO07274.5prime
CAGTCGACATGATAATGAGCACACCGGCGAAAAATAACAATGGAACTGGA
CTGGAGGACGTGAATATTCCGGGTCAGGCCTATCTGCGCGAGGCCCTGAC
CTCCTGCACTGATCCCTTGAAGGCCATCGAGAGTTTTCAGCTTGAGAATG
GTGTATTGCTGCCTTCACTGCGCCCCATGTTGCCTTTACTCGATTTGCAC
GGCGTGCGTCGACTGGACTTTCATACCTCGCTGATGGAGGAGCTGCGCGA
CAAGCTGATAGCTCACATCAACGAGATGGGCCAAAAGGAGCCCCGGGAGC
GGGACAAGAAGCTCAAGGAGCTGCTCGTTAAGAGCTTCCCCGTCGTTCGG
GTGAAGTCGCTGCGGCCCGTGGTCATGGCCATATTGAGGAATACCCAGCA
CATCGATGACAAGTACCTCAAAATCCTTGTAAGGGATCGGGAACTGTATG
CGGACACGGATACGGAAGTTAAGCGGCAGATATGGCGTGATAATCAATCG
TTGTTTGGTGACGAGGTGTCGCCTCTCCTCTCACAATATATTCGCGAGAA
GGAGCACATCCTGTTTGATCACACCAACTTGAACAATCTGTTCTTCCACC
CAACGCCCAAGGTGCGAAGGCAGGGGGAAGTAGTCCAAAAGTTGGCCAAC
ATGATTGGCACCAGTGTCAAGCTGTACGATATGGTGCTGCAGTTCCTGCG
CACTCTATTCCTGCGCACCCGCAATGTTCACTATTGCACGCTGCGTGCAG
AGCTACTGATGGCCTTACACGATCTCGAGGTGCATGAGATCATCTCGATA
GATCCCTGTCACAAGTTCACCTGGTGCCTGGACGCCTGCATAAGGGAGAA
GATGTGGACATTAAACGTTCACGGGAGCTCCAGGGATTTCTTGACACATC
AGCGCGGTCAGGAGCAGGTTCTGGGCGATCTGTCATGACTTTGTGCGATC
CGTATGCCATCAACTTTTTGGCCACGTCGGCATCAGATATTGCATCACTT
GATCACACGAGGGCATGCCGCGTGACAATCAGATACTCATCTGTTGTGAG
ATGTGCCTTGGCTGAATGCCTGGGTGATGATCGATCCAGACTTTAGGAAC
CTACTTGAATGCAGTGTCACAGGTTTTGGCCGCCCTAGTCTTATGTGACG
ACAGCCGAACTGGACGCCAAACTACCCGGACAGACGATAAATC
FMO07274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 78..1170 | 8..1085 | 5070 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7727165..7728080 | 1041..134 | 4170 | 98.8 | Minus |
| X | 23542271 | X | 7728152..7728284 | 140..8 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:59 has no hits.
FMO07274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:01 Download gff for
FMO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 71..1190 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:18 Download gff for
FMO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 32..1151 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:42 Download gff for
FMO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 71..1190 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:42 Download gff for
FMO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7728152..7728288 | 1..140 | 97 | | Minus |
| X | 7727114..7728073 | 141..1085 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:01 Download gff for
FMO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7622185..7622321 | 1..140 | 97 | | Minus |
| arm_X | 7621147..7622106 | 141..1085 | 98 | <- | Minus |
