FMO07276.5prime Sequence
1196 bp (1035 high quality bases) assembled on 2008-10-06
> FMO07276.5prime
CCGTCGACATGTCCTTTCGCTCGAGATCAAGAACCCAGGCGCCCCTGTCC
AGTCGGCGGCGATCGTTGTCCTCCAGTTCGCGAATGGCTCCATCAAGTGG
TGGTTCCGGGGCCTATAACTACAACGGAAGTAGCTATAGCAGCTCCGGCA
GCACTGGTCGTCCCCTGAGCACGGGCTACTTTCCCAGCAGCAGTAGCGCC
TCCAGTTACCAGAGTCCCTATGCCAGTGTGTACAGCTCGAGGGAGAGCTT
GTACGGCGGAGGAGGTGCTGGTCGGAGTTCTTATGGCAGCGGTGGTGGTG
GATACGACAGTTCCAGGTACAATCCCAGTTCCTATTCCTCGGCGGGATCT
TCGTACTCCACAAGCGATCGATATGTCAGCCCCTATTCGAGTAGTTATGA
TAAGGGTGTGACCACCGCTTCGCTGACCTTCAAGTCGCCCGGTTTGAGTT
CGTCCAATTCGTTCAAGAGTTCTCGTTTACTGAAGACCAAATCACTGTCA
GCATCAAATAGCAGCCTGAATGGTGCCTATGGTGGTCCATCCTCGAATGG
GGTAACCAGTGCCGGAGCCACTGTGGCCGCCATCGCAGCCACAAGGAGCA
ACTCTTTGCGGGAACAGGAGCGCAAGTCTCGCAATCGCACGCGGTCGAAG
AGTGCGGCACAGAGATCCATTAGTGCTTCCTCAGAGAAGAGTGAAGGATA
TGAAAGTGGCAGTGAGCGGACATCCCGTTCCCGGCTGGGCAGCACCGCGA
GTACGGCCACCACCAGCGAGTCAAAGAGCTCCAGCAGCAATGACAAGACG
GAGAATGGCGATGGCATTGACTACAAGCGCTCTGGGAAGCGGAAAAATTG
GAAAACGATAAGCTGAGCAGATGCTCAAGCAGAAGGACGATGAGCCGTCC
AGACACGTGCAACACTCGAGAGATTCGCCATGCCACAACGAAATTCACTA
TCTGAACTTGAGAAACGCGAAGAAGAGCTATGGACGCAAGCTTTCCGAGT
TGGAAGAAGAGCTCAGGCTATGCAGAGCTAAGACTGAAAACGATCGTCTG
CACGAGATCGGCCTACGCGGTCGTTCAGCTGACCACCTCGCTCAAGTCAG
CTGCAAGACCAAGCAAGCCTTTCTTGAACATCGCTGGCGCGGCAGTATGT
CAATCATACTATCTATCTAATCACACCTTGCCTATGAGAGATCCGT
FMO07276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RE | 1906 | CG32156-RE | 116..1238 | 5..1103 | 4995 | 97.5 | Plus |
| Mbs-RF | 2404 | CG32156-RF | 116..1134 | 5..1015 | 4875 | 99 | Plus |
| Mbs-RQ | 4482 | CG32156-RQ | 3392..3814 | 705..1103 | 1510 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16076229..16076648 | 285..704 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 16075484..16075765 | 5..286 | 1395 | 99.6 | Plus |
| 3L | 28110227 | 3L | 16076982..16077124 | 705..846 | 665 | 99.3 | Plus |
| 3L | 28110227 | 3L | 16077192..16077277 | 847..930 | 315 | 96.5 | Plus |
| 3L | 28110227 | 3L | 16077731..16077807 | 941..1015 | 285 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:11 has no hits.
FMO07276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:39 Download gff for
FMO07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 113..1249 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:19 Download gff for
FMO07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 112..1248 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:42 Download gff for
FMO07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 113..1249 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:42 Download gff for
FMO07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16075481..16075764 | 1..285 | 98 | -> | Plus |
| 3L | 16076230..16076648 | 286..704 | 100 | -> | Plus |
| 3L | 16076982..16077124 | 705..846 | 99 | -> | Plus |
| 3L | 16077192..16077282 | 847..934 | 95 | -> | Plus |
| 3L | 16077723..16077809 | 935..1017 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:39 Download gff for
FMO07276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16070082..16070224 | 705..846 | 99 | -> | Plus |
| arm_3L | 16070292..16070382 | 847..934 | 95 | -> | Plus |
| arm_3L | 16070823..16070909 | 935..1017 | 94 | -> | Plus |
| arm_3L | 16068581..16068864 | 1..285 | 98 | -> | Plus |
| arm_3L | 16069330..16069748 | 286..704 | 100 | -> | Plus |
