FMO07278.5prime Sequence
821 bp (821 high quality bases) assembled on 2008-10-06
> FMO07278.5prime
CAGTCGACATGGGAACGAAGATCGAGTACGTGGACACCACGCACCTGTAC
GCCTCCAAGTACATCCGCAACTCCAAGGCGATCGGTGTGCTGTGGGCCAT
CTTCACCATTTGCTATGCCATCATCGGCATCGTGGCATTCGTGACACCAG
AGTGGATCGGTGATCCGGACAACGATGGAGCTGGTCGCCTGGGCCTCTGG
CAGCAGTGCCAGCGGGACGAGATCTTCGACAACTGCCGTCGACGATGGGA
GAGCATCTTCGAAGTGCCCACATTCTCGTTTCAGTTGGCCACATTCTTTA
TGCTGGGCGCCATAGCACTGGCCTTGCTGACCATATTCTTCTTGGTTTGT
TTGCTGTTTATGAAGTCGACGCGTGTTTTCCACCTTTGCGGTTGGATGCA
AATCATATCAGCTATTTGCATGATTGTGGCCTGCGCGGCGTTTCCCTTTG
GCTGGAATTCGGACGATTTCCGTAAGATCTGTGGACCGGAAGCGAATCGC
TTCGAGCTGGGCTTGTGCGGCATCCGCTGGGCTTATCCACTGGCCATAAT
CGGTTGCATAGATGGCGTGGTCTTGGCCACTCTGGCGTTTATCTTGGCCA
CGCGGCACGTGCGCCTGCAGCCAGATCCGATATACCAGAACTCGCTATAC
AAAGGTGAAATCAACAATGCTTACCTCACAGATGCCATCAGCTTGGCGGG
CTCGAGGAAATCCAACCCACGCATAACTGGCTTGAATTTGCAGCCCATTT
TGCTGGTGGCTCCGCCAAACGAGGATAGCATATCGCAGTTTTCTCGTTAT
CACGCAAGCTTTCTAGACCAT
FMO07278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tmhs-RA | 1453 | CG12026-RA | 264..1058 | 9..803 | 3975 | 100 | Plus |
| Tmhs-RB | 1413 | CG12026-RB | 224..1018 | 9..803 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1890612..1890860 | 409..657 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 1890917..1891067 | 653..803 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 1889807..1889948 | 9..150 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 1890015..1890152 | 147..284 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 1890317..1890452 | 280..415 | 665 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:03 has no hits.
FMO07278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:38 Download gff for
FMO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tmhs-RB | 224..1023 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:20 Download gff for
FMO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12026-RA | 264..1063 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:20 Download gff for
FMO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tmhs-RB | 224..1023 | 9..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:20 Download gff for
FMO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1890615..1890857 | 412..654 | 100 | -> | Plus |
| 3L | 1890919..1891072 | 655..809 | 98 | | Plus |
| 3L | 1889807..1889948 | 9..150 | 100 | -> | Plus |
| 3L | 1890019..1890152 | 151..284 | 100 | -> | Plus |
| 3L | 1890322..1890448 | 285..411 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:38 Download gff for
FMO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1890322..1890448 | 285..411 | 100 | -> | Plus |
| arm_3L | 1889807..1889948 | 9..150 | 100 | -> | Plus |
| arm_3L | 1890019..1890152 | 151..284 | 100 | -> | Plus |
| arm_3L | 1890615..1890857 | 412..654 | 100 | -> | Plus |
| arm_3L | 1890919..1891072 | 655..809 | 98 | | Plus |
