FMO07280.5prime Sequence
1220 bp (1038 high quality bases) assembled on 2008-10-06
> FMO07280.5prime
CTGTCGACATGATCACCTTAGCCCCTCTGATCGTCCTAGTCCTCGCTTGC
CTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTGATCCTGTC
CGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGAGCATACGA
TCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCTACACGCCC
TCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGCATGTATGC
GCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATGCTACGGAC
CGCACTGGCGGCGTGCCCTGGAGCCCCGGGCTTTGCCATACATCTTGCAG
CAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAATCAGTACTG
GGGCGCTGGGGATGTGCCAAAGGGTTGGAATAACTTCTACGGCCTTCACG
GGAACTCTAGATACTATAACTACACACTGCGCGAAAATACCGGCAACGTG
CACTACGAGTCGACCTACCTATCCGATCTGCTAAGAGATCGCGCCGCTGA
CTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGCGATGGTCG
CCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGACATGAGGGT
GTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAATCAAGTTAA
GCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCCCAACGAAA
CCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAACGCTGCTG
GCCGTGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAACGATACGCA
ATCGTTGGAGAACACCTACATTATCTACACCTCGGATAACGGCTACCATG
TGGGCAGTTTGCACAGCCCTTCGATAAGAGACAGCCCTACGAAACGGATA
TTAACGTACCGCTGCTAATCCGGGGACCTGGAATAGCACCTGAAGCACAT
TGACACTGCGTCAGTCTAGTGGACTTGCACGACTATATTGGCCTGGCCGA
CTCGACACCATCTAACATGGATGGGCAATCATTCCCGAGCTTGCTCACAA
AAGGCAAAGGGTCCATTTCCAGCGGTCCTGTTGATCGATATTGGGCAGGA
ACTTGGCACTACTGATGCCTGGCAGAAAAGGATCGAATGGGCGGCAGTAT
ACCCCGCGCACCGTAGTGGT
FMO07280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-RA | 1683 | CG30059-RA | 76..1224 | 8..1138 | 5235 | 97.9 | Plus |
| CG18278-RA | 1677 | CG18278-RA | 70..1218 | 8..1138 | 5025 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13413790..13414489 | 710..11 | 3485 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13409063..13409762 | 710..11 | 3275 | 97.9 | Minus |
| 2R | 25286936 | 2R | 13408623..13409011 | 1083..705 | 1460 | 95.9 | Minus |
| 2R | 25286936 | 2R | 13413350..13413738 | 1083..705 | 1460 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:55 has no hits.
FMO07280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:28 Download gff for
FMO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 70..1161 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:34 Download gff for
FMO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 57..1148 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:40 Download gff for
FMO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 70..1161 | 1..1083 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:40 Download gff for
FMO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13413350..13413737 | 706..1083 | 96 | <- | Minus |
| 2R | 13413795..13414489 | 11..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:28 Download gff for
FMO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9300855..9301242 | 706..1083 | 96 | <- | Minus |
| arm_2R | 9301300..9301994 | 11..705 | 100 | | Minus |
