FMO07281.5prime Sequence
1200 bp (977 high quality bases) assembled on 2008-10-06
> FMO07281.5prime
CAGTCGACATGACTTGGGGATTTGTAACCTGCGGCCCCAACGAGGCTTTA
GTTGTCTCTGGGTGCTGCTACATGAAGCCGCTTTTGGTGCCGGGAGGACG
AGCATTCGTTTGGCCAGTGGGCCAGCAGGTTCAGCGAATTTCGTTGAACA
CGATGACCCTCCAGGTAGAGAGTCCTTGCGTGTACACCAGCCAAGGAGTG
CCCATCTCGGTGACAGGCATTGCACAGGTGAAGGTCCAGGGTCAGAACGA
AGACATGCTGCTGACCGCCTGTGAGCAGTTCTTGGGCAAATCAGAGGCAG
AGATCAACCACATCGCCTTGGTCACCCTGGAGGGGCATCAGCGTGCCATC
ATGGGTTCGATGACCGTGGAGGAGATCTACAAGGACCGCAAGAAGTTCAG
CAAGCAGGTGTTTGAGGTGGCCTCCAGCGATTTGGCCAACATGGGAATAA
CCGTGGTTTCCTACACCATCAAGGATTTGCGCGATGAGGAGGGCTACCTG
CGGTCATTGGGTATGGCTCGCACGGCGGAGGTGAAGCGCGATGCCCGCAT
TGGCGAGGCTGAGGCCCGAGCGGAGGCCCACATTAAGGAGGCTATTGCCG
AGGAGCAACGCATGGCCGCACGCTTCCTCAACGATACCGATATTGCCAAG
GCCCAGCGCGACTTTGAGCTGAAGAAGGCAGCATACGATGTGGAAGTGCA
GACCAAAAAGGCCGAGGCCGAGATGGCCTACGAGCTGCAAGCGGCCAAGA
CCAAGCAGCGCATCAAGGAGGAGCAGATGCATGTGAAGGTGATCGAGCGC
ACGCAGAGATTGCCGTCCAGGAGCAAGAGATCATGCGCCGCGAGCGGGAG
CTGGAGGCCACCATCCGCCGACGGCCGAGGCGGAGAAGTTCCGCATGGAG
AAATTGGCCGAGGCCAACAAGCAGCGCGTGTTCATGGAGCTGAGGCCGAG
GCTGATCGATCAGATTCGTGGTGAGGCTGAGCCTTTGCATTGGCGGCCAA
GCTAAGCAGAGCGAGCAATGGCCATGAGGCGAGGCCTATCGCGAGTTCCG
CGAGCTGCGATGGTGGAAATGCTCCTGACCACTGCAAGGTTGCCGCGAGG
TGCTGCTCCTGTCCAGCTAAAAATCCAATGGCTCACGGAACTGCCAATCA
TGCTGCCAGCGACGGGAAGTCTGTCAATCTCACAAATGTCCAAGATGTGT
FMO07281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 235..1355 | 9..1109 | 4870 | 96.8 | Plus |
| Flo1-RB | 1830 | CG8200-RB | 235..1367 | 9..1109 | 4740 | 95.8 | Plus |
| CG30466-RB | 2017 | CG30466-RB | 159..211 | 61..9 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15567247..15567715 | 955..490 | 2075 | 97.7 | Minus |
| 2R | 25286936 | 2R | 15568151..15568507 | 492..136 | 1770 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15568751..15568827 | 136..60 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 15569118..15569170 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:30 has no hits.
FMO07281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:39 Download gff for
FMO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 227..1253 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:36 Download gff for
FMO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-RA | 225..1251 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:55 Download gff for
FMO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 227..1253 | 1..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:55 Download gff for
FMO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15567149..15567172 | 959..981 | 95 | <- | Minus |
| 2R | 15567243..15567713 | 492..958 | 97 | <- | Minus |
| 2R | 15568152..15568506 | 137..491 | 99 | <- | Minus |
| 2R | 15568751..15568826 | 61..136 | 100 | <- | Minus |
| 2R | 15569119..15569175 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:39 Download gff for
FMO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11454654..11454677 | 959..981 | 95 | <- | Minus |
| arm_2R | 11454748..11455218 | 492..958 | 97 | <- | Minus |
| arm_2R | 11455657..11456011 | 137..491 | 99 | <- | Minus |
| arm_2R | 11456256..11456331 | 61..136 | 100 | <- | Minus |
| arm_2R | 11456624..11456680 | 1..60 | 93 | | Minus |
