FMO07284.5prime Sequence
1219 bp (1028 high quality bases) assembled on 2008-10-06
> FMO07284.5prime
CAGTCGACATGGCTTCTCTTTACGTCGGTGATCTCCCACAGGACGTCAAC
GAATCGGGACTTTTTGACAAGTTCTCGTCTGCTGGTCCAGTGCTGTCCAT
TCGTGTCTGCCGCGATGTGATTACCCGTCGCTCGTTGGGCTATGCCTACG
TCAACTTCCAGCAGCCAGCCGATGCTGAGCGTGCTTTGGACACCATGAAC
TTTGACCTGGTTCGCAACAAGCCCATTCGCATTATGTGGTCTCAGCGTGA
TCCTTCTCTTCGTCGCTCAGGTGTGGGCAACGTGTTCATCAAGAACTTAG
ATAGGGCCATCGACAACAAGGCAATCTACGACACTTTCTCCGCCTTCGGC
AACATTTTAAGCTGCAAGGTAGCCACCGATGAAAAGGGCAACTCAAAGGG
CTATGGATTCGTCCACTTCGAGACCGAGGAGGCCGCAAACACGTCCATCG
ACAAAGTCAATGGCATGTTGCTCAACGGCAAGAAGGTCTACGTGGGTAAG
TTCATCCCGCGCAAGGAGCGCGAGAAGGAGCTGGGCGAGAAGGCTAAGCT
CTTCACCAATGTATATGTGAAGAACTTCACTGAGGATTTCGACGATGAAA
AACTGAAGGAATTCTTTGAGCCCTACGGCAAGATAACCAGCTACAAGGTC
ATGTCCAAGGAGGATGGCAAGAGCAAGGGCTTCGGATTCGTTGCATTCGA
GACAACAGAGGCTGCTGAGGCGGCCGTTCAGGCTCTCAATGGCAAGGACA
TGGGAGAGGGCAAGTCCCTGTACGTGGCTCGTGCCCAGAAGAAAGGCCGA
ACGCCAGCAGGAGCTGAGGCGCAAGTTCGAGGAACTGAAGCAGAAGCGTC
ACGAGTCTGTGTTCGGCGTTAACTGGTACGTTAAGAACCTGGACGACACA
TCGATGACGATCGTCTGCGCATCGCGTTCTCTCCATACGGCAACATCACA
TCGGCCAAGGTCATGACCGATGAAGAGGGTCGCTCAAAGGGAATCGGCTC
CGGGTGCTTCAATGCCGCAAGGCGAGGCTAACTGCGCCGTCACCGAGACT
GAACGGTTCGCGTCGTCGGGCAGTTAGCGGTTGTACGTTGCTTTGGCCCC
AAAGGGAGGAGGAGCGCAAGGGCTCATTCTCGCCCTCGCAATAATGCGTC
AATGAACGGCATGGCGTATGGCAGAAACTTGCACGATTTTATACGGTCAA
CACGAGGTCTTGAGCGTCG
FMO07284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 198..1352 | 9..1170 | 5290 | 97.7 | Plus |
| pAbp-RB | 3870 | CG5119-RB | 62..1216 | 9..1170 | 5290 | 97.7 | Plus |
| pAbp-RC | 3127 | CG5119-RC | 275..1429 | 9..1170 | 5290 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18143412..18144354 | 174..1121 | 4230 | 98.1 | Plus |
| 2R | 25286936 | 2R | 18141507..18141677 | 9..179 | 825 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24524945..24525124 | 467..288 | 225 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:16 has no hits.
FMO07284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:59 Download gff for
FMO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1432 | 9..1174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:15 Download gff for
FMO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RF | 238..1395 | 9..1174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:56 Download gff for
FMO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1432 | 9..1174 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:56 Download gff for
FMO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18141507..18141672 | 9..174 | 99 | -> | Plus |
| 2R | 18143413..18144404 | 175..1174 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:59 Download gff for
FMO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14029012..14029177 | 9..174 | 99 | -> | Plus |
| arm_2R | 14030918..14031909 | 175..1174 | 97 | | Plus |
