FMO07285.5prime Sequence
1141 bp (995 high quality bases) assembled on 2008-10-06
> FMO07285.5prime
CAGTCGTCATGGCATCGGATCACGATGAGTCCGATGCAGAGCTGGACGAG
AACTACTATACGTTTCTGAATTTGCCCCGCGATGCCACTGCGGAGCAGAT
CAACACGGCGTACCGGAAACAGAGCCGCATGTTCCACCCGGACAAGCACC
TGGATCCGGATAGCAAGAAAATGGCTGAGATCATGTTCAACCGCACGAAG
CGTGCCTACGAGGTCCTCTCTGATCCCCAACAGCGGGCCATCTACGACTC
GGTTGGCGAGAAGGGACTACGGACCGAAGGCTGGGAGATTCTGCACCGAA
CAAAGACTCCGGATGAGATTCGGGAGGAGTACGAGCGGCTGGCGCAGGCG
GCCGCTGAAAGACGTCTACAGCAGCGGACCAATCCTCGTGGTAACATTAC
CATCAACGTGAATGCCACGGAGATCTTCGCACCGTACGACGACTCTGAAA
TGCCGCACGTAGAGATCGGCTCCATGAGCATTGCCCAGTCCATCGAGGCT
CCGATCACGCGGAAAGATATGATCATCATGAGCGGCAACCTGTACTCATC
CAATGGCAATGGTAGCGGTGGCTTCGTGATCGCCGGCCGACGGCTGCTCA
ACAAGGGCTGGATAGAGCTATGTGCCGGAGCGGGCAACGGATTCCTTCTG
GGTCTTAAGGGTGGCCGCACTCTTAGCCAAAAGCTGACGTTGAATGGAGG
CACCAATCTGAACTTTCGTGACCAAGGTGTCATACCCGCCCTGTTCTCCA
CGCTGGCCGTGCAGCTAGACAAGCACACGATGGGTAGTCTAACACTAAAA
CGCTGGTTCGCAATCCTCCATGTCCACACAGATCGATCACTCCAAGGAGA
CTTACTCGCTGAGTTCGTCGCTGGTGATTGGAACACCACCATGTTTTCTT
TCGGGTCTTTTCTACACCCGCAAAATGATGGAGAACGAGCCTCAAGCTAA
AACTGGCGGCAACAGTGGAACTTTGGCTTTATGGGAAGAGTATGGAGTGG
AAAAAAAGTTTCCAAGTACAGTTCTGTGACAGCGACCGTTCGAATTGGCC
GTGCCTTAGAAATCATAACTAAATTTAAATACTTCGGTCAAATCAATCGG
AAGGGGTTCCCCATCCATTCTAAGCGATGGAAATAGTACCA
FMO07285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8531-RA | 2001 | CG8531-RA | 154..1282 | 8..1141 | 5065 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14256787..14257365 | 84..662 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 14257420..14257717 | 660..962 | 1255 | 97.4 | Plus |
| 2R | 25286936 | 2R | 14256646..14256722 | 8..84 | 385 | 100 | Plus |
| 2R | 25286936 | 2R | 14257781..14257846 | 971..1036 | 220 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:30 has no hits.
FMO07285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:44 Download gff for
FMO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8531-RA | 148..1281 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:39 Download gff for
FMO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8531-RA | 180..1313 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:41 Download gff for
FMO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8531-RA | 148..1281 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:41 Download gff for
FMO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14256640..14256721 | 1..83 | 96 | -> | Plus |
| 2R | 14257421..14257718 | 661..963 | 97 | -> | Plus |
| 2R | 14256787..14257363 | 84..660 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:44 Download gff for
FMO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10144145..10144226 | 1..83 | 96 | -> | Plus |
| arm_2R | 10144292..10144868 | 84..660 | 100 | -> | Plus |
| arm_2R | 10144926..10145223 | 661..963 | 97 | -> | Plus |
