FMO07286.5prime Sequence
1171 bp (996 high quality bases) assembled on 2008-10-06
> FMO07286.5prime
CAGTCGTCATGTTTTTGACTCAACAGCAGCAGCTGCCGCAGCTTAAACAG
CAACTACAGCAGCAGAGGCAACAGGAATTTTCGAAGCGAACCCAGCCTTA
CGGAGTGGGTCCAGGCACACCGTTTAGCCTGGGGATACAGCGCAATTCGA
ACTCTCTTAGCCATCGATATCCGATGCTCTTCCCACCCCAGAGCCTTAAC
AGCTATGGTGATGGTGGCCAGGAGTTTGCAAGCTTGCCTCCCCTGAACAA
CATGATGGGAGGGCCGGAAGGGCTTGGGTGCGATCAGGAACCGAATTCGA
CGGATGTGCTGGATGGCAGCGAAAGCAATCCCAACTTTACCAAGGGATTT
CGGTTCAGCGATCCGTGCCTACTGAACCCCTCCGATAATGACTCTAAGCT
GAGTGGCCAGAATACACCAGAGTGTCGAAATGTGAACAACAATGGCAGTG
GCTGTGATCTGGCACATCAAAACAAATTTTTCGCGGCTCTAATGGAACAA
ATAAACATATTGCACGACACCAATTCCAAGATCTGCCGGAATTTGCATAA
TACAAAAGTTGATATCGAAGCTTTAAAGCACTCCCCTAATAGCCAGCACT
GGGCAGGTGTAGGCTTTGGGGGCATGCGGCACCGTAGAGATAGCTTAAGC
GGGCTAAGCACACAAAGTCAACCTCTTATTCTTGGCAGTGGATTGGGAGG
GACACACAGCCCAGCGCCCACATTTCACTCAGGCGCCTACACTCCAGGAA
TGATGACGGATGTCGTGCGGGAAGTGAAGGAGCAGCGCGCATACGCGAAG
ATGCACTGCTAAGTCGAGTAAAATTAATGGTTGAAGAACGTCAGTGTTCC
TTAAACGAGGGAAATGTCCGAATTCTGAGAGATATAGACGATCTAAGACC
CAGTAATGCAGTTGCGACTGGAAGAAAAAGGAGACTAACAAACGCCTCTC
ACATCTGAATCCGAAAACAGTGCTTCGTCAGCTCTGCCGGTGTATAACCA
CGGCATCAGTACGAACTTATTACGAAATGACCGATCCATGATCGAGCAAT
TCCGATGGGGGGTGGCAGCGGATTGGGTCCGGTGCCTCGGAAATCACGCA
ATCTCACCTCATAGAACATGCACAGCCATCAGCACATCTTGAGAGGACGA
ATAGAGGACGTATAGAGCAGT
FMO07286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9795-RF | 2390 | CG9795-RF | 669..1779 | 9..1092 | 4785 | 96.9 | Plus |
CG9795-RE | 2573 | CG9795-RE | 669..1779 | 9..1092 | 4785 | 96.9 | Plus |
CG9795-RD | 2825 | CG9795-RD | 635..1745 | 9..1092 | 4785 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4323952..4324164 | 346..558 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 4323687..4323889 | 144..346 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 4324335..4324511 | 557..733 | 885 | 100 | Plus |
3R | 32079331 | 3R | 4323488..4323622 | 9..143 | 675 | 100 | Plus |
3R | 32079331 | 3R | 4324729..4324809 | 816..896 | 405 | 100 | Plus |
3R | 32079331 | 3R | 4324584..4324672 | 729..816 | 395 | 98.9 | Plus |
3R | 32079331 | 3R | 4324878..4324945 | 902..969 | 245 | 97.1 | Plus |
Blast to na_te.dros performed 2014-11-28 22:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6849 | 21..76 | 172 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 21..74 | 171 | 79.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1124..1184 | 21..82 | 155 | 76.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2362 | 21..76 | 154 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2399 | 21..77 | 150 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6848 | 21..96 | 146 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 21..77 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 21..77 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 21..77 | 141 | 71.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1135 | 21..77 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6858 | 21..73 | 139 | 73.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3364 | 21..94 | 136 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6911 | 21..87 | 135 | 70 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..715 | 98..22 | 133 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2870 | 21..74 | 128 | 74.1 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..726 | 74..20 | 122 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2374 | 21..73 | 121 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2832 | 21..63 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1112..1162 | 21..74 | 110 | 70.4 | Plus |
FMO07286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:51 Download gff for
FMO07286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9795-RD | 630..1682 | 2..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:40 Download gff for
FMO07286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9795-RC | 657..1709 | 2..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:12 Download gff for
FMO07286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9795-RD | 630..1682 | 2..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:12 Download gff for
FMO07286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4323483..4323622 | 2..143 | 97 | -> | Plus |
3R | 4323687..4323889 | 144..346 | 100 | -> | Plus |
3R | 4323953..4324164 | 347..558 | 100 | -> | Plus |
3R | 4324337..4324510 | 559..732 | 100 | -> | Plus |
3R | 4324588..4324672 | 733..816 | 98 | -> | Plus |
3R | 4324730..4324811 | 817..897 | 98 | -> | Plus |
3R | 4324873..4324932 | 898..957 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:51 Download gff for
FMO07286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 149205..149344 | 2..143 | 97 | -> | Plus |
arm_3R | 149409..149611 | 144..346 | 100 | -> | Plus |
arm_3R | 149675..149886 | 347..558 | 100 | -> | Plus |
arm_3R | 150059..150232 | 559..732 | 100 | -> | Plus |
arm_3R | 150310..150394 | 733..816 | 98 | -> | Plus |
arm_3R | 150452..150533 | 817..897 | 98 | -> | Plus |
arm_3R | 150595..150654 | 898..957 | 96 | == | Plus |