FMO07288.5prime Sequence
1197 bp (1016 high quality bases) assembled on 2008-10-06
> FMO07288.5prime
CAGTCGTCATGAAGTGCCTGATAGTGTTTGGTCTGATTGTGGCCCTGTTT
GGTGCCTTCGTGGGCTATGGCTACGTGGTATTCACGGAACTGACCAAGCC
CCTGCCCAAGCCGGAGTTCAAGGATGATACGTACTGGGGTCCCGGCGATG
CCAAGGACTTTGTGCCCGACGAAAAGATCTACGAGTTTAAGCTGCAGGTG
CCGCAATCGGAGATCGATGATCTGCGAAAGGAACTCAACCGCACGCTGAG
ACTAACCGAACCGCTGGACGGAATCGCCTTTGAATACGGATTCAACACCT
ATGCACTGGAGCAGTTTGTGGACTACTGGCGGGACAATTACCTGACCAAG
TGGGATGAGCGCCAGGAGCTGTTCAACTCGTTCAAGCAGTACAAGACCGA
AATTCAGGGCTTGAATATTCACTATATCCACGAAAAGGTATCCGAGGAGG
CTAAGGAAAAGAAACACGTATATCCTCTGCTCCTGCTCCACGGCTGGCCA
GGATCGGTGCGCGAGTTCTTCGACTTTATACCCATGCTAACCAAGCACTC
AAACATCACGGATTACGCTTTTGAGGTCGTGGCACCATCCCTGGTGGGCT
ACGGATGGTCCGATGCTGCCACGCGTCCCGGATTTAATGCCGCTGAAATG
GCCACTGTGATGCGTAACCTGATGCTGCGTCTGGGCCACAAGAAGTTCTT
CATCCAAGGCGGAGATTGGGGCAGCATCATTGGCAGCAACTTGGCCACCT
TGTATCCAGAGAACGTAATCGGTTACCACTCGAACATGTGCGTTCTGCAC
ACGCCACTGGCCATTCTGAAAGGAATCTACGGCAGCTTCTTCCCGGAGAA
GTACTTGCCGTCCAGATTCTTTGTGGATCATCACTTCCCCGTTGTGGGAA
AAATGGCTGGAGCTGCTGGAGGAAAGCGGTTACTTTCACATCCAGGCACC
AAGCCGGATACGATTGAGCGGCTCTGACCTCAGTCCGTCGGCTTGCCTCT
ATATTCTTCGAGAAATTCCGGACTGCACCAATCCCGCTGAGCAGACTTTG
CGCATAGTCACTGTTCTTCGCTGAGCCTGTCCTGACAACTGATGTCTACT
TTCTTGACAAACTCGGCACAGACAGCGGCTCGTTCACTGAACTGTCCGAC
GTTACAGATTCCACTGTAATCTGTGGTGCACTCTCCGGTTCCATATG
FMO07288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jheh3-RA | 1576 | CG15106-RA | 153..1293 | 9..1134 | 5005 | 97.1 | Plus |
| Jheh1-RA | 1486 | CG15101-RA | 699..832 | 658..791 | 340 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18861526..18861926 | 409..9 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 18860825..18861192 | 981..615 | 1680 | 98.9 | Minus |
| 2R | 25286936 | 2R | 18861260..18861466 | 615..409 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 18854088..18854221 | 791..658 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:40 has no hits.
FMO07288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:51 Download gff for
FMO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh3-RA | 153..1219 | 9..1064 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:42 Download gff for
FMO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh3-RA | 146..1212 | 9..1064 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:46 Download gff for
FMO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh3-RA | 153..1219 | 9..1064 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:46 Download gff for
FMO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18861261..18861465 | 410..614 | 100 | <- | Minus |
| 2R | 18860732..18861192 | 615..1064 | 95 | <- | Minus |
| 2R | 18861526..18861926 | 9..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:51 Download gff for
FMO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14748237..14748697 | 615..1064 | 95 | <- | Minus |
| arm_2R | 14748766..14748970 | 410..614 | 100 | <- | Minus |
| arm_2R | 14749031..14749431 | 9..409 | 100 | | Minus |
