FMO07291.5prime Sequence
1217 bp (1047 high quality bases) assembled on 2008-10-06
> FMO07291.5prime
CAGTCGACATGGCTGCGGCTGCTGTTGCCACACCGGGGGCCACTGTGCTC
CCTCCCTCGGTGCCCAGTGCCGCTCCAGGGGCCAAGGCTCCAGCGGCTGG
AGCTGGCAAAGGTCCAGGAAATCTACTGGAGATCACTGGCGAAGCAAATA
TCGTCAACTATATGAAGAATCGTCTAAGGAAGGGTGCGATGAAGCGAAAG
GGTCTCGAAATGGTCAATGGTCATCGTTTCGGAGTTAGATTCTTTAAGAA
TCCAACCTACTGCGGTCATTGCAAGGATTTCATCTGGGGCTTTGGCAAGC
AAGGTTTTCAGTGCGAGGAATGCCGCTTCAACATTCACCAGAAGTGCTGT
AAATTTGTGGTGTTCAAATGTCCTGGCAAGGACACGGACTTCGATGCCGA
CTGCGCTAAGGTGAAGCACGGCTGGATTTCCACCACCTACACCACACCGA
CATTCTGCGACGAGTGCGGACTGCTGCTCCATGGAGTCGCCCATCAGGGC
GTCAAGTGCGAGAATTGCAACCTAAATGTGCATCACGCCTGCCAGGAGAC
AGTGCCACCGATGTGTGGTGCGGACATCAGCGAGGTGAGGGGTAAACTAC
TGCTATACGTCGAGCTTAAGGGCAATAACTTGAAAGTTGATATTAAGGAG
GCAGCTAACCTCATTCCCATGGATACCAACGGGTTTAGCGATCCCTATAT
TGCAGTGCAAATGCATCCGGACCGTTCGGGGCGCACCAAAAAGAAGACCA
AGACCATTCAGAAAAACCTCAATCCAGTGTTCAACGAGACTTTTACTTTT
GAGTTGCAGCCGCAAGACCGTGACAAGCGTTTGCTCATCGAGGTTTGGGA
TTGGGATCGAACTTCTCGCAATGATTTCATGGGATCGTTCTCGTTCAGCC
TGAAGAACTGCAAAAGGAGCCAGTTGATGGCTGGTATAAGTTTCTGTCGC
AAGTGAAGGTGAACATTATAACATACCCTGTGGTGGATGCCTTTAATGAT
TTAGCTCGCTTAAGGATGAAGTTAGGCACGATCGTCGTCCGAATGAAAGC
GTCGCATGACAACAGATTATGCCGCATAATATTGAACAAACGCGAATATG
ATCGAGCTGCTGAATCACTTTTAAAGTATTGGCAGGGAATCCCTGCCAGT
TTGCTGGCCGAGCTCTGAAGGATGAGACGTATATGCCGTGTAAGGTCCTC
GTGCAAAGGAGGTGTTA
FMO07291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaC-RA | 2351 | CG6518-RA | 111..1253 | 9..1142 | 5215 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16898645..16898923 | 9..287 | 1395 | 100 | Plus |
| 2R | 25286936 | 2R | 16899169..16899364 | 318..513 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 16899832..16900060 | 800..1026 | 890 | 96.5 | Plus |
| 2R | 25286936 | 2R | 16899615..16899771 | 643..799 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 16899425..16899558 | 514..647 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:47 has no hits.
FMO07291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:03 Download gff for
FMO07291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaC-RA | 111..1285 | 9..1171 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:55 Download gff for
FMO07291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaC-RA | 63..1237 | 9..1171 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:34 Download gff for
FMO07291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaC-RA | 111..1285 | 9..1171 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:34 Download gff for
FMO07291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16898645..16898922 | 9..286 | 100 | -> | Plus |
| 2R | 16899084..16899115 | 287..318 | 100 | -> | Plus |
| 2R | 16899170..16899364 | 319..513 | 100 | -> | Plus |
| 2R | 16899425..16899553 | 514..642 | 100 | -> | Plus |
| 2R | 16899615..16899771 | 643..799 | 100 | -> | Plus |
| 2R | 16899832..16900060 | 800..1026 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:03 Download gff for
FMO07291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12786150..12786427 | 9..286 | 100 | -> | Plus |
| arm_2R | 12786589..12786620 | 287..318 | 100 | -> | Plus |
| arm_2R | 12786675..12786869 | 319..513 | 100 | -> | Plus |
| arm_2R | 12786930..12787058 | 514..642 | 100 | -> | Plus |
| arm_2R | 12787120..12787276 | 643..799 | 100 | -> | Plus |
| arm_2R | 12787337..12787565 | 800..1026 | 96 | -> | Plus |
