FMO07293.5prime Sequence
1217 bp (1042 high quality bases) assembled on 2008-10-06
> FMO07293.5prime
CAGTCGACATGTCCAACTGCATAGAGATCCCTTTGCAGGACACCGATGAG
GTGATCGAGGTGGACCCGGATCAACTGCCCGACTGTCCAGAGGTGTTGAG
CATTCTCAAGCAGGAGCGGGCGCCCCTGCACGTTTGGGTCAATGTGGCGC
TTGCCTACTACAAACAAAAGAAGACGGAGGACTTTGTCACGCTGCTGGAG
GAGTCGCGCAGCGATGACGCCACCAAGGAGTACCGCGACTCGGACAAGGA
CCTCATGCGTGCCCTGGACATGCTCGCTGCCCACTATGTCCAGGAGGCGT
ATCGGGAGAAGTCCAAGGACAAGAAACGAGAGCTCTTCATGAAGGCCACC
AACTTGTACACCAGTGCCGACAAGATTATCATGTACGACCAGAGCCATCT
GTTGGGCAGGGCCTACTTCTGTCTGCTGGAGGGCGACAAGATGGACCAGG
CGGATGCCCAGTTCAACTTTGTGCTTAACCAGTCCCCCTCGAATATTCCC
TCCCTACTGGGAAAGGCCTGCATCGCGTTCAATCGCAAAGATTACCGTGG
AGCGATGGCCTTCTACAAGAAGGCCTTGCGTACAAATCCAAACTGTCCTG
CGAATGTGAGAATCGGCATGGCCCATTGCTTCCTGAAGATGGGCAATCCC
GAGAAGGCCAAGCTAGCCTTTGAACGAGCGCTCCAGCTGGATCAGCAGTG
TGTGGGCGCTTTGATTGGCCTGGCCGTTCTCAAGCTGAATCAACTTGAGC
CCGAATCCAACAAACTGGGTGTCCAGATGCTCTCCAAGGCGTACACCATC
GACAATGCCAATCCCATGGTGCTCAATCACCTGGCCAATCACTTCTTCTT
TAAGAAGGACTATCAGAAAGTCCACCACCTGGCGCTGCACGCCTTCCACA
ACACCGAGAACGAGGCGATGCGAGCCGAGAGCTGTACCAGCTGGCCAGGA
GTTTCCATGCCCAGAGCGACTACGATCAGGCCTTTCAGTACTATACCATC
CACTCAGAATGCCCCCAGCTAACTTCGTGCTGCCATTACGGACTAAGCCG
ATGTATATTTATCGAAGGAGAATACAGAAAATGCCGCCTCATGTTCGAGA
AAGTGCTGAAATTCCAGCCAGCACCTACGACATGGAGATTGGATCCCTGT
ACCCACTCATTGAACCGCTGCATGCAGACTCACTCGAAAAGGTCACCGAC
AACCAATTTCCTGTGGA
FMO07293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2469-RA | 3702 | CG2469-RA | 152..1311 | 8..1156 | 5290 | 97.8 | Plus |
| CG2469-RB | 3770 | CG2469-RB | 220..1379 | 8..1156 | 5290 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1307963..1308884 | 149..1065 | 4260 | 98.7 | Plus |
| 3L | 28110227 | 3L | 1307802..1307902 | 49..149 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 1307699..1307745 | 8..54 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:11 has no hits.
FMO07293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:05 Download gff for
FMO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2469-RB | 220..1386 | 8..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:57 Download gff for
FMO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2469-RA | 147..1313 | 8..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:02 Download gff for
FMO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2469-RB | 220..1386 | 8..1164 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:02 Download gff for
FMO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1307699..1307741 | 8..50 | 100 | -> | Plus |
| 3L | 1307804..1307902 | 51..149 | 100 | -> | Plus |
| 3L | 1307964..1308899 | 150..1082 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:05 Download gff for
FMO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1307699..1307741 | 8..50 | 100 | -> | Plus |
| arm_3L | 1307804..1307902 | 51..149 | 100 | -> | Plus |
| arm_3L | 1307964..1308899 | 150..1082 | 98 | -> | Plus |
