FMO07294.5prime Sequence
1219 bp (1048 high quality bases) assembled on 2008-10-06
> FMO07294.5prime
CAGTCGACATGCACAGCAACAATAATAGCAGCAGACTCAACAACAACATA
AGCAACAATTATTATCAACAAAAACAATCGCTTATACGCTATTTGGATCG
AGCTGCTGTTGGTCTGAACGGTGTCGAGTTCGAGGGCAGCAAGCTGCATG
CCGAGCAGCTGGACAAGAACCAGCGGCGTAGCCAGCGTAACCAGCGCAAT
CCGTATCCGGGTATGCCCGGTCCCGGACGCCAGGCGGACTTTCCGCTGCG
CATTCTTGTGCAGAGCGAAATGGTGGGCGCCATCATTGGTCGACAGGGCA
GCACCATCAGGACGATCACACAACAGAGCCGTGCTCGCGTCGACGTCCAT
CGTAAGGAGAATGTTGGATCGCTGGAGAAATCGATTACGATCTATGGCAA
TCCGGAGAACTGCACCAACGCCTGTAAGCGCATCCTGGAAGTTATGCAGC
AGGAGGCCATCTCTACGAATAAGGGTGAAATTTGCCTCAAAATACTCGCC
CACAACAATTTGATTGGACGAATCATTGGCAAGTCGGGCAATACCATTAA
ACGGATCATGCAGGACACCGATACGAAGATCACTGTCAGCTCTATCAACG
ACATCAACAGCTTCAATTTGGAGCGAATCATTACGGTCAAGGGATTAATT
GAGAACATGTCGCGTGCTGAGAACCAAATTAGCACCAAGCTGCGCCAGAG
CTACGAGAACGATCTGCAGGCGATGGCGCCGCAGAGCCTCATGTTCCCCG
GTCTCCATCCGATGGCAATGATGTCGACACCGGGCAACGGCATGGTCTTC
AATACGAGCATGCCGTTCCCCTCGTGTCAAAGCTTTGCCATGTCCAAGAC
TCCGGCTAGTGTGGTGCCACCGGTCTTCCCCAATGACCTACAGGAAACCA
CCTATCTCTACATACCCAACAACGCTGTCGGCGCCATTATCGGCACCAGG
GCTCGCATATCCGAAGCATATGCGCTTCTCGAACGCATCCCTTAAAATAG
CCCCCTCGACGCGACAAGCCGCTGGAAAACAAACGGGAGCGCAAGGTGAC
GATTGTGGCCCACCCGGAGGTCAATGGAAAGGCGCATAACATGATCTCAG
AAAATGCCCGAAATGCTCATGGTGGCACGACAATGGGCCCTCGTGAATGC
TTGGTCCAGTTTAAGTGCCGAACATGGCCAAGGGGTGCCAAAGTGGCGGG
GAATTGCTACCACCCCGTG
FMO07294.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Imp-RB | 2863 | CG1691-RB | 307..1416 | 9..1112 | 5160 | 98.3 | Plus |
| Imp-RA | 3300 | CG1691-RA | 528..1637 | 9..1112 | 5160 | 98.3 | Plus |
| Imp-RC | 6762 | CG1691-RC | 501..1610 | 9..1112 | 5160 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10797919..10798545 | 1097..475 | 2650 | 96.3 | Minus |
| X | 23542271 | X | 10798619..10798994 | 475..100 | 1880 | 100 | Minus |
| X | 23542271 | X | 10805266..10805357 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2450 | 5..77 | 137 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2458 | 13..76 | 137 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2429 | 13..77 | 133 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2374 | 14..76 | 132 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2486 | 17..58 | 120 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2951..2998 | 13..57 | 116 | 75 | Plus |
| BS | 5142 | BS BS 5142bp | 2037..2076 | 21..60 | 110 | 75 | Plus |
FMO07294.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:12 Download gff for
FMO07294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RC | 495..1576 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:36 Download gff for
FMO07294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RC | 491..1572 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:41 Download gff for
FMO07294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RC | 495..1576 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:41 Download gff for
FMO07294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10797960..10798544 | 476..1056 | 98 | <- | Minus |
| X | 10798619..10798993 | 101..475 | 100 | <- | Minus |
| X | 10805266..10805363 | 1..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:12 Download gff for
FMO07294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10691993..10692577 | 476..1056 | 98 | <- | Minus |
| arm_X | 10692652..10693026 | 101..475 | 100 | <- | Minus |
| arm_X | 10699299..10699396 | 1..100 | 96 | | Minus |
