FMO07295.5prime Sequence
1207 bp (991 high quality bases) assembled on 2008-10-06
> FMO07295.5prime
CAGTCGACATGTCCAACGGCAAGGCGACGGTCTCGTTCTTCGAGACCGGG
AGCACCAAACAGTTCGAGTACTGCTACCAGCTCTATCCCCAGGTTCTTAA
GCTAAAGGCCGAGAAGCGCTGCAAGAAGCCGCAAGAGCTGATCCGCCTGG
ATCAGTGGTATCAGAATGAACTGCCCAAATTGATTAAGGCACGCGGCAAG
GACGCGCATATGGTATACGATGAGCTCGTCCAGTCGATGAAGTGGAAGCA
GTCGCGCGGCAAATTCTATCCGCAGCTATCCTACCTGGTCAAGGTCAACA
CACCGCGCGCCGTCATCCAGGAGACAAAGAAGGCCTTCCGCAAGCTGCCC
AATCTGGAGCAGGCGATCACAGCTTTATCGAACCTCAAGGGCGTTGGCAC
CACAATGGCCAGTGCACTGCTGGCAGCCGCAGCTCCCGATTCGGCACCAT
TCATGGCCGACGAGTGCCTGATGGCCATACCAGAGATCGAGGGCATCGAT
TACACCACCAAGGAGTACCTCAACTTCGTCAATCACATTCAGGCCACCGT
GGAGCGCCTCAATGCGGAGGTGGGCGGGGATACGCCGCACTGGTCGCCTC
ATCGCGTGGAGCTGGCCCTCTGGTCACACTATGTGGCCAATGATCTCAGT
CCCGAGATGCTCGACGATATGCCGCCGCCTGGATCCGGCGCCTCCACTGG
CACCGGTTCACTCAGCACAAACGGCAACAGCAGCAAGGTGCTCGATGGCG
ACGATACCAACGATGGTGTGGGTGTTGATTTGGACGACGAAAGCCAAGAG
CAAGCGGTCGCAACACTGCTACAGAATCGGAGACAGAGAATGAGAACACC
AACCCGGCTGCTCTGACGCCTCTACAGTCGGGCGAGGCAAAGAACAACGC
AGCTGCCGTTGGCGCCGCCCTGCAGACGGTGACTTCAACTTTGTTTCGAA
CGATTCCACTCCCAGGAGCCGATCATCGATGACAACGATGGCACCACACA
GAAAACGGCCACCACTTCAACGAAGGACGGTGAGCCCATCGCCTAAAACA
TGCATGCATCCGGTTCGAGTGACACCGCTCGCCTCGGAACCTGAAAGCAA
TCAGGGAGGCCCGCCAGAAACAAGCCTGTCCATTCTGATCACACGCACTC
GAGCAGATCCGAATCAAGACGGTGCGCGAAACCGCCCCCTAAGAACTATA
CGTTTCG
FMO07295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-RK | 3028 | CG2446-RK | 690..1865 | 9..1167 | 5155 | 96.8 | Plus |
| Amun-RJ | 2658 | CG2446-RJ | 320..1495 | 9..1167 | 5155 | 96.8 | Plus |
| Amun-RL | 2622 | CG2446-RL | 284..1459 | 9..1167 | 5155 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11712775..11713564 | 798..9 | 3950 | 100 | Minus |
| X | 23542271 | X | 11712058..11712366 | 1105..804 | 1040 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:02 has no hits.
FMO07295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:03 Download gff for
FMO07295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RI | 642..1765 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:37 Download gff for
FMO07295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-RC | 666..1789 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:45 Download gff for
FMO07295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RL | 278..1401 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:45 Download gff for
FMO07295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11712058..11712366 | 804..1105 | 93 | <- | Minus |
| X | 11712769..11713570 | 1..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:03 Download gff for
FMO07295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11606091..11606399 | 804..1105 | 93 | <- | Minus |
| arm_X | 11606802..11607603 | 1..803 | 99 | | Minus |
