FMO07296.5prime Sequence
1210 bp (1026 high quality bases) assembled on 2008-10-06
> FMO07296.5prime
CAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACTCCGTTAAG
CAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGACACAGGAGT
CCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACACGGAAGGCT
ATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACGAGCTGCCA
CTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAGAACCACTG
GACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTATGGCCAGCG
AGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGACTGTATGAT
CCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCCACCATAGC
CGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACATCATTGTCA
AATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGCAGGTGCTG
CAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGTCCAGTAGT
CATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTACTCGATCA
AAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTGCATCCATT
GCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATGAGCTCCAT
TTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCATGAATAGCG
GCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGGTGTTTACC
CATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTTATGGACCGTG
TTCTGCCCATTGTCTGGCAGCTACTCACACAAATAGCCGAGACTTACGTG
AAGGTGTCGGTGAATCAAGACTGAAACAAGTCCGCTGGCCAGCGGCGACA
GCAAAGAAGAATGACGAACAAACCAATTCCAATCACTGAATCATCCAAAA
TCCTGAGTTCATCAACTGCATACTGACATGCACAAACTACGTGGCAGCAT
ATCAAAAATGGTGCTGGTCGAACTTCATATTACTAAACCATTGTTACCTC
ACCTAGACCGAAGACACGTTGAGAGAACTGGCATAGTAATCGGAAAAAAT
CCGGAAGTAATAAGGAAGAATAGGGCGGTGTGAACTCTAACCGGGTGGCC
CAGTGTGTGC
FMO07296.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp9-RD | 3243 | CG5252-RD | 105..1184 | 9..1095 | 4970 | 97.8 | Plus |
| Ranbp9-RA | 3311 | CG5252-RA | 173..1252 | 9..1095 | 4970 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11412913..11413559 | 146..792 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 11413613..11413869 | 792..1050 | 855 | 93.9 | Plus |
| 3R | 32079331 | 3R | 11412694..11412833 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:37 has no hits.
FMO07296.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:56 Download gff for
FMO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 166..1233 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:38 Download gff for
FMO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 166..1233 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:30 Download gff for
FMO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 166..1233 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:30 Download gff for
FMO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11412687..11412832 | 1..147 | 97 | -> | Plus |
| 3R | 11412915..11413559 | 148..792 | 100 | -> | Plus |
| 3R | 11413614..11413869 | 793..1050 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:56 Download gff for
FMO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7238409..7238554 | 1..147 | 97 | -> | Plus |
| arm_3R | 7238637..7239281 | 148..792 | 100 | -> | Plus |
| arm_3R | 7239336..7239591 | 793..1050 | 94 | == | Plus |
