FMO07301.5prime Sequence
1173 bp (987 high quality bases) assembled on 2008-10-06
> FMO07301.5prime
CAGTCGACATGGCAACTTTAGACGCGGAAGCCAACGAGGAGCAGTTCGGC
AATGATCAGCCCAAGTCGATGTCGGGTCCAATCATTGGGATTATCTATCC
GCCGCCGGAAGTTAGAAATATCGTTGACAAGACCGCCAGTTTTGTGGCTC
GCAATGGACCGGAATTCGAGGCGCGCATCCGCCAAAATGAGCTGGGCAAT
CCAAAGTTTAACTTCTTAAATGGCGGAGATCCCTACCACGCATACTACAG
ACACAAGGTCAACGAGTTCCGCGAGGGCAATGATGCCGGTATCACTGCCC
TTGCCAGCATGAAGCAGCTGGCGGTGACCAGTGCCGCCCAACAGCGCCAG
CAAGAGCTTCTCAAGCAAGTGGTGGAGCAGCAGTTCGTACCAAAGGAACC
TCCACCTGAATTCGAGTTCATAGCCGATCCGCCCTCCATTTCGGCGCTGG
ATTTGGACATTGTGAAGCTAACTGCTCAATTTGTGGCCCGTAACGGCCGA
CAGTTTCTGACCAATCTTATGAGCCGGGAGCAGCGTAACTTTCAGTTTGA
CTTCCTGCGACCCCAGCACTCGCTCTTCCAGTACTTTACCAAGTTGCTGG
AGCAGTATACCAAGGTCTTGATACCTCCAAAGGATTTGCTGGGCAAACTG
CGTTCCGAGAGCGCACCGGGGCAGGAGCAGCATGGACCAGGTGCTGGAGC
AGGTTAAATATCGGGCCAACTGGCAGCGTCACCAAGAAGCACAACGCCGC
CGTGAGGAGGAGAAGATCGAAAGGGAGCGCGTGGCCTATGCCCAAATCGA
TTGGGCATGACTTTGTGGTGGTGGAGACGGTGGACTATCAGCCATTCGAA
TCGGCAACTTCCCGCCACCCACAAATCCCGACGAGGTAGAGCCCGTGTGC
TAATGGAAGAGCGTCTAATGACGAGAGGGCGATCAGAAATGCGATCGAGT
CGGACGACGAGGGCGACTCCAGGCTAACAACCTATTGGACAGCGGTCTGA
AACTCTCGCAATGGAGACCGTTGTGGGGTATACAAATGAAGAACGTATCG
GGATTGGCAGCCAACTGGTCCTAGAAAGAACACCCAGGGCAAGACATGGA
CGAGCCTCTAAGGATAGGAACGTCCACTGCTAGATTGACCCATCTGTTGG
CCAATGGGTGCGCCCCACCACGA
FMO07301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 96..1210 | 8..1110 | 4980 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17000973..17001573 | 1050..455 | 2395 | 97.4 | Minus |
| 3R | 32079331 | 3R | 17001634..17001807 | 455..282 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 17001864..17002028 | 282..118 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17002151..17002260 | 117..8 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:45 has no hits.
FMO07301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:05 Download gff for
FMO07301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1220 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:01 Download gff for
FMO07301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1220 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:19 Download gff for
FMO07301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1220 | 1..1119 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:19 Download gff for
FMO07301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17001864..17002028 | 118..282 | 100 | <- | Minus |
| 3R | 17002151..17002264 | 1..117 | 97 | | Minus |
| 3R | 17000896..17001573 | 455..1119 | 95 | <- | Minus |
| 3R | 17001635..17001806 | 283..454 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:05 Download gff for
FMO07301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12826618..12827295 | 455..1119 | 95 | <- | Minus |
| arm_3R | 12827357..12827528 | 283..454 | 100 | <- | Minus |
| arm_3R | 12827586..12827750 | 118..282 | 100 | <- | Minus |
| arm_3R | 12827873..12827986 | 1..117 | 97 | | Minus |
