FMO07304.5prime Sequence
898 bp (898 high quality bases) assembled on 2008-10-06
> FMO07304.5prime
CAGTCGACATGCCGTCGGTTCCAGCGCCGGCTGCTGTGCCAGCCACTTTG
TCGGTCAGCGCTTCCGGCACTCAGATGCTGCGCCCTCAGACTCTGGCCGG
CCCCGAGCGGGAGCCTATCGAGTTCAACATCAACCTGGTGGGAGCTCCTC
CCGAGGTGGAGCAGCTGGTGGAGCAGATCAAGAGCGTGGCCGAGCAATTC
CTCTACCACTGGAAGAGCTTTCCCATTGTTTTGCCTCAGGCGCTGGCTAA
CAGTGGTCTGAATTTGACGGCGAGAAACGCGACCAATAGCGTGAGCAGCC
GTAAAACACGTCCCATTAATCTGCGCGACCTCTTTATAGCGCCTCCCTTT
GACGAGCTGGACGCCGTGGCATCTGACGGGAGCGGAGAGCCCCGCCGGCT
GACGAGCGCCCAGCTGAAGACTCTGCGGGAAACTGGCTTGCAAAAGGATA
AATATGGAAAGCCGAAGAAATTAACTTTGGAACAATTGGAAACAATACGT
AAAAATGGCGAGTTCGATGTGCCCAGTCTTTATTTTCCTGGCCAGAGTGC
ACAAGTGGCGTCTGTCCCAAGTACTCCAAAAGGGCAAGCTGCGGGCGCAG
GACTCCTTTCTGAGCGATCTGGCCTTGGCTGCCCGGTTCGTGGTGGTCAC
TGCCCGAGCTCGCATCTTCTCCCACTTCTTTTCGGTCGTGCAGGCGATGC
ACGGCTTGCTGGAAGCGTTCACCAGACTTGCTGATATGGTCATCGGTGTG
CCGGCTCTTTTGGCCACAACCTGACTATAAGATTAAAGAGGAGCGCTGCC
GATTTCTCATAGCCGAGTTGGTTTGTCGGCCCCGAATACGAGGATTGTTT
ACACGGCCTGTGTTCCTAATGTCCGGAGATGCTGCGTCCCGCCTACGA
FMO07304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-RA | 5665 | CG2519-RA | 228..1117 | 8..898 | 4265 | 99 | Plus |
| CG2519-RC | 5863 | CG2519-RC | 498..927 | 8..437 | 2150 | 100 | Plus |
| CG2519-RB | 5593 | CG2519-RB | 228..657 | 8..437 | 2150 | 100 | Plus |
| CG2519-RC | 5863 | CG2519-RC | 920..1315 | 502..898 | 1780 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5544747..5545069 | 829..508 | 1455 | 98.8 | Minus |
| 3R | 32079331 | 3R | 5546456..5546676 | 228..8 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 5546193..5546401 | 436..228 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 5545671..5545743 | 508..436 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 5544514..5544575 | 892..831 | 205 | 88.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:33 has no hits.
FMO07304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:07 Download gff for
FMO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 221..1116 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:03 Download gff for
FMO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 214..1109 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:31 Download gff for
FMO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 221..1116 | 1..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:31 Download gff for
FMO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5545671..5545742 | 437..508 | 100 | <- | Minus |
| 3R | 5546193..5546400 | 229..436 | 100 | <- | Minus |
| 3R | 5546456..5546683 | 1..228 | 98 | | Minus |
| 3R | 5544510..5544575 | 830..897 | 92 | <- | Minus |
| 3R | 5544747..5545068 | 509..829 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:07 Download gff for
FMO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1370232..1370297 | 830..897 | 92 | <- | Minus |
| arm_3R | 1370469..1370790 | 509..829 | 98 | <- | Minus |
| arm_3R | 1371393..1371464 | 437..508 | 100 | <- | Minus |
| arm_3R | 1371915..1372122 | 229..436 | 100 | <- | Minus |
| arm_3R | 1372178..1372405 | 1..228 | 98 | | Minus |
