FMO07307.5prime Sequence
1235 bp (975 high quality bases) assembled on 2008-10-06
> FMO07307.5prime
CAGTCGACATGCATCCCATGACGATGATGATGCTTCACATCGTGATTTTA
GCAGCCACTTTTACGGCTGCGCAGTGTTTTCAATTGAACATGACGCAGTT
CTATGAGATGCCTCCTCTATACGACTTGGATGACTATGATCGTTGCCTCC
AGGAATTGAATGGCCAGGCGTCCACTTACTGCTTCGTCCGCGCGGAAGTC
CAGCCCGATGAGTCTGTAGCGGCATGGCGGGCAATTGCAAAGATTTCGCA
GTACGATCGCCATCACTTCGATCACCGACAGCTCTATTTCGGTCTCTGCC
TGCGCGAATGTGAGGCGTCTCTGGCCGGGTTGAATAAAAGCGAACTGGAG
GCCCTGCAAGCCGGCCTGCTATCGGAAAATGCAAAGGTGAACGTATATCT
GGACTTGTTCTCGATGGAAGCCAATAACCGCCAACGGCACCAGCGCTTGA
CAAATGCCTGCCTGAACTGGCGTCTGCAGCGTCGTGGATTCGGGGTGCTG
GCCAAGAGCGTGGTGGAGTACTGCGATGAGGCGGGACATCAAGTGGAAGA
TGATGCGTGGAACCTGACCTTCTACGGAATCTTGGGCACTCTACTGGTTC
TGGCTTGTCTGGGTAGCTTAGTGGATCTGCATCTAAAGCGAAGCCGTCAT
GATAAAATGCTCAAGGAGCGAGATCACTACAAGACACCGCCCAAGAGCAC
TGCCCAACAGGTGCTGCTCACCTTTTCGGTGGCCCGCAATTGGTACCGAC
TTAATCAGAGCCAAGTGGTAAGATCGGTCGCGAGCTGAGATTTCTCGACT
GCTTCAAGTTCTTTGCCATGTTCATGGTGATATTTGCGCACACCAACTGG
GTGATTTTACGAGAGCGCCATCACCAATTCCGCATGATCCGGAGCGACTG
CTTCACACGGCAGCTGGCACTTTACTCGTTTCAGGAATCATTGATCACTG
GGACCTTTTTTGTGATCAGGGTTTGTTGCTTAACATTACTGGCTGGCCGT
TTCACGTTCGCTAGAATCTAGAAGGACTCTTGGAGCTCGGCAGTTAGCTT
GCTATTTGTCAGATAACATCTTCGATACATCCGACTGACGGTTCCTATGC
CTTGCATGCCTATAATGGGAATACTTGAGAACGCTTGAGTCACGTGTGGC
GTCATCTTGAACGGAAACGTTGACTTGCACCACACTGGGTGAATATTCTG
CTCTCTATCTCGCAGACATATTGTTACCGCCCCGA
FMO07307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4576-RA | 2433 | CG4576-RA | 351..1453 | 9..1103 | 5000 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15828521..15828989 | 552..1020 | 1985 | 97.7 | Plus |
| 3R | 32079331 | 3R | 15827101..15827398 | 91..388 | 1475 | 99.7 | Plus |
| 3R | 32079331 | 3R | 15828226..15828393 | 385..552 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 15826097..15826178 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:03 has no hits.
FMO07307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:15 Download gff for
FMO07307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 344..1458 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:15 Download gff for
FMO07307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 342..1456 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:48 Download gff for
FMO07307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 344..1458 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:48 Download gff for
FMO07307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15828228..15828393 | 387..552 | 100 | -> | Plus |
| 3R | 15826090..15826178 | 1..90 | 95 | -> | Plus |
| 3R | 15827101..15827396 | 91..386 | 99 | -> | Plus |
| 3R | 15828522..15829085 | 553..1107 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:15 Download gff for
FMO07307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11651812..11651900 | 1..90 | 95 | -> | Plus |
| arm_3R | 11652823..11653118 | 91..386 | 99 | -> | Plus |
| arm_3R | 11653950..11654115 | 387..552 | 100 | -> | Plus |
| arm_3R | 11654244..11654807 | 553..1107 | 95 | | Plus |
