FMO07311.5prime Sequence
1170 bp (1047 high quality bases) assembled on 2008-10-06
> FMO07311.5prime
CAGTCGACATGCTGGCCAAAGTGCTAACTATCTTGGCCATCGTGGCTTCA
GCAGGAGCTGCTGACGACTTTGATCCTTTCATAGATATACCCTTCAAACG
GCTCAAGACTTCGGCGGAGCGCATTGCGGAGCACGGCTACCCGGCCGAAT
CGCATTTTGTTGAGACCCCGGACGGCTATGTGCTGAATGTGTTCCGCATT
CCCCACTCCCCCAAGCTGAATAGCAATGGCAACGAGGGGGAGTCGGAGGC
ATCGCGCCCGGTGGTCCTCATCATGCACGGGCTGTTCAGCTGCTCGGATT
GCTTCCTGCTCAATGGGCCGGAGGATGCGCTGCCGTACAACTACGCAGAT
GCCGGCTACGATGTCTGGCTAGGCAACGCCCGTGGCAACATCTATTCGAG
AAACAACACCCGGCTGAACGTGAAGCATCCGTACTTCTGGAAGTTTAGCT
GGCACGAGATTGGCTCCATCGATTTGCCCGCCACGATTGACTACATCCTG
GCTGAGACGGGTCAACAGTCGCTGCACTACGTCGGCCATTCCCAGGGATG
CACTTCCTTCTTCGTGATGGGTTCCTACCGGCCGGAGTACAATGCCAAGA
TCAAGACGGCGCACATGCTCGCACCGCCCGTCTACATGGGCAACTCCACA
GAGGGACTCATTGTGAGCACAGCTCCGCTGTTTGGTCACCATGGCATTGG
CTCCACGCTGCTGGAAAACCAGGTTTTGCTGCCCCAGAACGCGTTCATCC
AGCGAGTACTGGACACCACATGCAGCAATCAGCCGATCATGCTCAGCTAC
TGCAAACCTTGGCCATCCTCTGGGGAGGTCCCGAAATCGGCACCTTAACC
AGACTCTGCTCCCGCAAATTGCCGAAACCCATCCCGCTGGAGTCTCCTCA
ACCAGGCCATTCACTACATTCAGTCCTACGCCTCCACGATTTCCGTTGTA
CGATTGGGGCAGCAGAGAAACCTGAATACTACGGCGTGTCAGAGCTTCGG
CATATGATCTCCACCAGAATCACCTCGAGCTGTACTTATACTATGGCTTG
CTGAATGGATCCGCCAATAAGCAGACATCTCCGTCTGCCGATCCTTTCTG
CCATTTGCACTGCTTACGAGGTCCGATTCACAATGGGGTCACTGGACTTA
TTCTGCGCCACACGAGTGCT
FMO07311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2772-RA | 1338 | CG2772-RA | 47..1215 | 9..1161 | 5145 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3446348..3447089 | 113..852 | 3610 | 99.7 | Plus |
| 2L | 23513712 | 2L | 3447141..3447371 | 850..1074 | 640 | 93.1 | Plus |
| 2L | 23513712 | 2L | 3446038..3446143 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:08 has no hits.
FMO07311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:07 Download gff for
FMO07311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 38..1156 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:59 Download gff for
FMO07311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 33..1151 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:49 Download gff for
FMO07311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2772-RA | 38..1156 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:49 Download gff for
FMO07311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3446029..3446142 | 1..113 | 97 | -> | Plus |
| 2L | 3446349..3447089 | 114..852 | 99 | -> | Plus |
| 2L | 3447144..3447407 | 853..1107 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:07 Download gff for
FMO07311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3446029..3446142 | 1..113 | 97 | -> | Plus |
| arm_2L | 3446349..3447089 | 114..852 | 99 | -> | Plus |
| arm_2L | 3447144..3447407 | 853..1107 | 92 | | Plus |
