FMO07313.5prime Sequence
1200 bp (1036 high quality bases) assembled on 2008-10-06
> FMO07313.5prime
CAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCATCTTAACA
GATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACAGCGCTCCT
CAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGATCCATCA
ACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAACCTGTCG
CCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCGGGTCTCAC
GGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAGCAACAATG
GCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGTCGGGCACC
ATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATCGAGCTGTT
GTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAATTCAGGG
CCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTCGTGGTAC
ATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGGTCATGTC
CTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGAAATCCAGT
GGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCCGCTCCCAC
CACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCCTACATCAT
CAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGTGTATGGAC
TCTACCTCGAGCACACTGCCATTGTGAAACATAACCATCCGCGCCAGTCC
GCAGCCCAAGATCGAGTGGGACCATCGATGGAGCTATTGTGGGGCAGGGA
CGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGGCAACGA
TGAGTACAACGTTAACACTGGCCATTGCCGGACTGACCCTGAAGATACAC
AAAATCTACAATCTGAGGGCAGCAATGAACTGGGACTGACGACTACCAGT
GCGATCAGTCGTCGAGCAACCGCCACAGCAGCCTCGATGGGCGGCATCGT
GGCATGTGGGTCGCGGTGGCGGTTGTCTGGACGGTTACTTGAATTGGTTG
CCAGACTATCGGCCAGTGGGGTTTTGGGGCAATCATACTAAGGCCATATG
AACAAAATAACTGCTATGTGAAATGTGATGCTAGCTTTCTTGAACATGTC
FMO07313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas3-RF | 2422 | CG5803-RF | 586..1663 | 8..1074 | 4890 | 98 | Plus |
| Fas3-RG | 3265 | CG5803-RG | 586..1663 | 8..1074 | 4890 | 98 | Plus |
| Fas3-RE | 2567 | CG5803-RE | 586..1663 | 8..1074 | 4890 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18383839..18384180 | 370..711 | 1710 | 100 | Plus |
| 2L | 23513712 | 2L | 18383399..18383719 | 49..369 | 1605 | 100 | Plus |
| 2L | 23513712 | 2L | 18384459..18384739 | 712..991 | 1090 | 97.2 | Plus |
| 2L | 23513712 | 2L | 18320687..18320730 | 8..51 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:50 has no hits.
FMO07313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:10 Download gff for
FMO07313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RD | 586..1653 | 8..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:03 Download gff for
FMO07313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RC | 587..1654 | 8..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:22 Download gff for
FMO07313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RE | 586..1653 | 8..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:22 Download gff for
FMO07313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18320687..18320709 | 8..30 | 100 | -> | Plus |
| 2L | 18383384..18383719 | 31..369 | 97 | -> | Plus |
| 2L | 18383839..18384180 | 370..711 | 100 | -> | Plus |
| 2L | 18384459..18384841 | 712..1079 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:10 Download gff for
FMO07313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18320687..18320709 | 8..30 | 100 | -> | Plus |
| arm_2L | 18383384..18383719 | 31..369 | 97 | -> | Plus |
| arm_2L | 18383839..18384180 | 370..711 | 100 | -> | Plus |
| arm_2L | 18384459..18384841 | 712..1079 | 93 | -> | Plus |
