FMO07315.5prime Sequence
1022 bp (948 high quality bases) assembled on 2008-10-06
> FMO07315.5prime
CAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAGTTATGGGC
AGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTTGCGCCGCT
GAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCGACCGCTGT
GCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGCCCGCTTCT
GGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTCACTCTGAA
TCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGAAAAACTGA
TCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAACAGTACGAC
AAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAGGATATTCA
GAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAATTTGGCCA
TGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTCACGGACGTTATG
AAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCCCAAGATACTTCA
CATCAGCTCCAAGATAGCACACATGTCTCAGCTGCAAGGGGATCTGGAAA
AGAGCTTTCAAGGGTTCACTTGGACCTTGCAGCAGTTGGCTAAGCTACTG
GAGAAAATGCCCGACGACAAGGACATACTGGAGCTGTATGGCTTGACAAA
AAATTTGGTTCGGGCAGCTGCTGATGAAGCAGGGAAAATACCTGGAGGCT
AAAAACCTCTTTATGAGGCCTTCGACACGCTCATAAATGTTTATGGTGCC
GTTAACGACGCCTCTGTAACATCCTAAATACCATCAGTGTGGCGTACGTA
AACCTGGAAAGTACGCCGAGGCAGGGAGACCCTTTTGGAGCCATGGAGCT
GACTAGGAGCTAAGGATGCCACCAGAGCCTTCTGCAGGCAATCTGGTTGG
GTATCTCCCGAGGCTGAGTCCAGCGAGACGCTTGCGACTGTCGTGAAACT
GGGAAGCACTCTGATCCGTATG
FMO07315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ttc19-RA | 1440 | CG15173-RA | 244..1266 | 7..1005 | 4410 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19044370..19044905 | 542..7 | 2680 | 100 | Minus |
| 2L | 23513712 | 2L | 19044155..19044319 | 705..541 | 810 | 99.4 | Minus |
| 2L | 23513712 | 2L | 19043936..19044084 | 853..707 | 615 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:06 has no hits.
FMO07315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:07 Download gff for
FMO07315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ttc19-RA | 238..1207 | 1..956 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:22 Download gff for
FMO07315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15173-RA | 236..1205 | 1..956 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:58 Download gff for
FMO07315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ttc19-RA | 238..1207 | 1..956 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:58 Download gff for
FMO07315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19043936..19044083 | 708..853 | 97 | <- | Minus |
| 2L | 19044154..19044317 | 543..707 | 98 | <- | Minus |
| 2L | 19044370..19044909 | 1..542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:07 Download gff for
FMO07315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19044370..19044909 | 1..542 | 99 | | Minus |
| arm_2L | 19043936..19044083 | 708..853 | 97 | <- | Minus |
| arm_2L | 19044154..19044317 | 543..707 | 98 | <- | Minus |
