FMO07318.5prime Sequence
1240 bp (1012 high quality bases) assembled on 2008-10-06
> FMO07318.5prime
CAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTGGTGATAGT
CTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGCTACGAACA
TATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCATACTATGGA
ACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAATAGTCAGT
GCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGATGAGTCCAG
CAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTATGCCTATG
GAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGAAGAGCGAG
AGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAGAATCGACC
GAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTATTTCTACCA
CGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGGATCGCCAC
TTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGGGAAAGAGG
ACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGAGATCGTGG
CCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCAGCAAAAAG
AGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCCATCGTTAT
CTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCTGACCAATG
GCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCACAGATCCC
ACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCCATCATTCA
CGACCACACGTATCCCATGAAACTTATCTGGAGCTCTTCCGCTTCAGCTA
CTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCATGCTGCTGC
GTTATGTATTCGCCGTGACTTCCAGCTGGTTGACATGATGATATGTTCGA
TAACGGACGAATGCTCTTGCACAGTTCGATTCACCGGTTATACACTGAGT
AGTGCAGCGACCAGTCCCAGCACCAGACGCCGAATGCGCTCGAGATCGAA
GAGACTTATCGAAGTCCCAGTTCGCACTTGAGCGATCTTTCGTTCCATTG
GAGGGTCAAGCCAGTCGAATTCGCAACTAGCATGACGCAACCTTCTGAAC
AATTCTTGTGGGACGCGCACGGACGTGAGCTACGCATGAT
FMO07318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14253-RB | 1886 | CG14253-RB | 238..1386 | 9..1147 | 5120 | 97.3 | Plus |
| CG14253-RF | 2286 | CG14253-RF | 728..1786 | 99..1147 | 4670 | 97.1 | Plus |
| CG14253-RA | 1981 | CG14253-RA | 423..1481 | 99..1147 | 4670 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26984705..26985063 | 656..1011 | 1585 | 98.1 | Plus |
| 3R | 32079331 | 3R | 26983963..26984217 | 100..354 | 1275 | 100 | Plus |
| 3R | 32079331 | 3R | 26984276..26984434 | 355..513 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 26984490..26984636 | 509..655 | 720 | 99.3 | Plus |
| 3R | 32079331 | 3R | 26978778..26978868 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:50 has no hits.
FMO07318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:56 Download gff for
FMO07318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14253-RB | 228..1396 | 1..1154 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:37:01 Download gff for
FMO07318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14253-RB | 225..1393 | 1..1154 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:30 Download gff for
FMO07318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14253-RB | 228..1396 | 1..1154 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:30 Download gff for
FMO07318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26978768..26978868 | 1..99 | 96 | -> | Plus |
| 3R | 26983963..26984217 | 100..354 | 100 | -> | Plus |
| 3R | 26984276..26984434 | 355..513 | 100 | -> | Plus |
| 3R | 26984495..26984636 | 514..655 | 100 | -> | Plus |
| 3R | 26984705..26985226 | 656..1163 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:56 Download gff for
FMO07318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22804490..22804590 | 1..99 | 96 | -> | Plus |
| arm_3R | 22809685..22809939 | 100..354 | 100 | -> | Plus |
| arm_3R | 22809998..22810156 | 355..513 | 100 | -> | Plus |
| arm_3R | 22810217..22810358 | 514..655 | 100 | -> | Plus |
| arm_3R | 22810427..22810948 | 656..1163 | 92 | -> | Plus |
