FMO07319.5prime Sequence
1227 bp (952 high quality bases) assembled on 2008-10-06
> FMO07319.5prime
CAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACAAGCAGACG
CGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGGTGTCGGCA
GGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCTCTGCATCG
AGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGCTGTGCATC
GGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATCACAATCAT
CAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATACAGCAAGA
ACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTGAAGTGCTC
GGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTGAAGATCCT
CGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCCGCCCGACT
GGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGAACTACTTC
ACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCGCAGTATGT
GGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCTTCTGGATA
AGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGCTGGATCTA
TCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGAGAACTGCA
ACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACATCTTCATGT
TCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGAACGCTGCC
TTGACCATTCGATCACTCCTGCATCCCACCAAGTTTATTATTTGTGGTGG
AGCACGATTTGTCTGTGCTGGATTACTTGTCTGACTTTATATGCTGCCTT
TACGGAGTTCCCGGCTGCTTACGTGTGATACTATGCCTTTTCCTCTGTGC
ACGAAGCATCAACATTTTCCTCGATGGCTTTGTGCCACCGAAAACATGCG
ATTCCGCACTGAGTCACTACTTCAAGGAATCTGAGTCCGCTCGGAGGAGA
GATCAGCGCATGACCATTCTTAATTCCGCCATGGTCAAGAACCTGGGCAG
TTCGTTGACGTGCAAAAGTCACTCACGACTCGAATCTGGGTTCTCTGGCC
GAACGGTCGAAACACCGTCATTTGCAGTGCTGCCGTACCTCACCGATGTG
GGAAGGCACTGCCTAGTGCGTATAATT
FMO07319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pix-RB | 2184 | CG5651-RB | 71..1193 | 8..1118 | 5020 | 97.4 | Plus |
| pix-RA | 2223 | CG5651-RA | 110..1232 | 8..1118 | 5020 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8973459..8974073 | 834..220 | 3075 | 100 | Minus |
| 3L | 28110227 | 3L | 8974134..8974347 | 221..8 | 1070 | 100 | Minus |
| 3L | 28110227 | 3L | 8973216..8973393 | 1018..842 | 610 | 94.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 299..211 | 115 | 61.8 | Minus |
FMO07319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:44 Download gff for
FMO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 99..1232 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:37:02 Download gff for
FMO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RB | 65..1193 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:58 Download gff for
FMO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 99..1232 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:58 Download gff for
FMO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8973127..8973401 | 833..1099 | 91 | <- | Minus |
| 3L | 8973461..8974071 | 222..832 | 100 | <- | Minus |
| 3L | 8974134..8974350 | 1..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:44 Download gff for
FMO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8966227..8966501 | 833..1099 | 91 | <- | Minus |
| arm_3L | 8966561..8967171 | 222..832 | 100 | <- | Minus |
| arm_3L | 8967234..8967450 | 1..221 | 98 | | Minus |
