FMO07320.5prime Sequence
1226 bp (929 high quality bases) assembled on 2008-10-06
> FMO07320.5prime
CAGTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTCACTGGCTG
CTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCGAATGCCGT
TAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATATGCATACA
GTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACAACATCAAG
TTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTGAATCGTAA
TTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAATCCGACTG
CCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGACGGGCTGC
ACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACCTACTGGAC
CCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCACCGCCCAGT
GGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCACTGTACCAC
ATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAATCGGGACG
AACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGTCCAGATGC
AGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTGGGATCAGC
AGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCCACACCCAC
TGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGGCACTGGCA
CCACCACCGCCGAGCGCAGCGTGTTCGATGAGTTCAGCATGCCGGCGATT
CAATGGGCGCCGGAACGCAATGAGGCAAAAGTGTTTGTCGACAGCAATCA
CAGTCTGGTCTCGCTAATGAACACGCATTGTTCCTTCGCCGGACTTGTTC
ATCGGCGTGGATTCGTTCAGCTCTGCGTGGTGCTCTGAATCGATACGTGA
CGTTGAGCTGGATCCTTTGGATGCCGGCACGATATGCTTCACTTCCACGC
CCCAACTGGCAACAGAACCTCAGCGCATCCATCCGAATCCCTCCGTTATC
TGACATTCTTGCAGTAGCTTTTAATATCGAAAAACAACCAATTGCCCGCC
CATCCCCGTTCCAGTTATCAGCTGATGGATTACAGACTGTACATGGTTTA
ACTTGCCAGGACCAATCGCAGTCAACGTTCTAAACCAACCCACCTGGAAC
CGGGAACACCACTTCCGGAGACAGGT
FMO07320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mspo-RB | 3131 | CG10145-RB | 351..1500 | 5..1133 | 4710 | 95.6 | Plus |
| mspo-RA | 2574 | CG10145-RA | 351..1500 | 5..1133 | 4710 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14712810..14713272 | 467..5 | 2300 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14684156..14684609 | 918..464 | 2070 | 98.5 | Minus |
| Xmm | 1049845 | Xmm | 780128..780174 | 702..748 | 190 | 93.6 | Plus |
| Xmm | 1049845 | Xmm | 745118..745160 | 744..702 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 679..721 | 740..698 | 161 | 86 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..717 | 744..711 | 152 | 94.1 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..777 | 650..504 | 144 | 61.5 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 689..722 | 748..715 | 134 | 88.2 | Minus |
FMO07320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:20 Download gff for
FMO07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 347..1389 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:59 Download gff for
FMO07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 346..1388 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:16 Download gff for
FMO07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 347..1389 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:16 Download gff for
FMO07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14684153..14684607 | 466..920 | 98 | <- | Minus |
| 2R | 14712812..14713273 | 1..465 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:20 Download gff for
FMO07320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10571658..10572112 | 466..920 | 98 | <- | Minus |
| arm_2R | 10600317..10600778 | 1..465 | 99 | | Minus |
