FMO07321.5prime Sequence
1186 bp (1026 high quality bases) assembled on 2008-10-06
> FMO07321.5prime
CAGTCGACATGCTTAAAAAAATTGCATTGTTTCTTATTATCTGGAGTTGC
GGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGAACGAAGTC
ACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATCCAGAGGTC
ACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATATTGAAGGA
CTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCACAACTATAC
GAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCCCATTAAGC
CCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGT
GACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATT
AGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGA
TTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCG
ACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCG
ATTTACGGACACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGC
AGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTT
GTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTC
GCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATC
CTAGAGCCTTTAATCCGAATGTAGCAGAAGTGGCTTGCATTCATTGTAGG
CCAGCTAGAAAACTTCCTAGAAACCTTGAGGATTTCATCGGTGCTTCTGG
AGCATCTGGATTTATTTACGTTTCTATGGGTTCCTCCGTAAAGGCTGCGA
ACATGCCAGAGGCGTGCGTCACATGCTGTAAAGACCTTTGCCACGTCTCC
CTATCATGTGCTATGGAGTATGAGGCAGTTCGACAGAATATAAAAGAAAT
CACATCAAACGTAAAACTTTCACGGTGGTTACGCAGCAGGACATTTTGGA
CATCCCAGCCTTAAGCGTTTGTACACCATGGAAGCCTGCTAGCATGGTTT
GAGAACGGTATATACAGAGTATACCGTGTTTCAATTGCCGTATACTGCGA
ACACGAAGTATCTCACCAAGCGCTGGGGCAATGAGT
FMO07321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 103..1258 | 7..1156 | 5135 | 97.2 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 187..1342 | 7..1156 | 5135 | 97.2 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 609..1764 | 7..1156 | 5135 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547987..5548458 | 626..1091 | 1725 | 94.9 | Plus |
| 2R | 25286936 | 2R | 5547628..5547924 | 330..626 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5539243..5539429 | 143..329 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 5267807..5268042 | 583..330 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5527295..5527376 | 7..88 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 5528754..5528813 | 86..145 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:33 has no hits.
FMO07321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:29 Download gff for
FMO07321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 605..1693 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:59 Download gff for
FMO07321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RD | 159..1251 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:27 Download gff for
FMO07321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 605..1693 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:27 Download gff for
FMO07321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5547628..5547924 | 330..626 | 100 | -> | Plus |
| 2R | 5547988..5548452 | 627..1085 | 96 | | Plus |
| 2R | 5539246..5539429 | 146..329 | 100 | -> | Plus |
| 2R | 5527290..5527375 | 1..87 | 96 | -> | Plus |
| 2R | 5528756..5528813 | 88..145 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:29 Download gff for
FMO07321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1414795..1414880 | 1..87 | 96 | -> | Plus |
| arm_2R | 1416261..1416318 | 88..145 | 100 | -> | Plus |
| arm_2R | 1426751..1426934 | 146..329 | 100 | -> | Plus |
| arm_2R | 1435133..1435429 | 330..626 | 100 | -> | Plus |
| arm_2R | 1435493..1435957 | 627..1085 | 96 | | Plus |
