FMO07324.5prime Sequence
1153 bp (1047 high quality bases) assembled on 2008-10-06
> FMO07324.5prime
CAGTCGACATGCTTATTTTCTACGCGAAGTACGCATTTATCTTCTGGTTT
TTCGTGGGAAGCAATCAAGGTGAAATGTTGCTAATGGACAAAATCTCTCA
CGATAAGACGCTTCTCAACGTCACCGCTTGCACCCAGAATTGTCTGGAAA
AGGGCCAGATGGATTTCCGAAGCTGTTTAAAGGACTGCAGGATTAATGGA
ACATTTCCCGGGGCTCTGCGCAAGGTGCAGGAAAACTACCAGATGAACAT
GATCTGCCGCACGGAGTCGGAAATCGTTTTCCAAATAGATTGGGTGCAGC
ACAGCAGGGGAACCGAGCCGGCTCCAAATGCCACCTACATAATCCGGGTG
GATGCTGTCAAGGACGACAACAAAGAAACTGCGCTTTACCTGTCTGATGA
CAACTTTCTCATCCTGCCGGGATTGGAGTCCAACTCTACCCACAACATCA
CCGCCCTGGCGATGCACGGAGATGGCAGCTACTCCTTGATAGCAAAGGAC
CAGACCTTCGCCACCCTCATCCGAGGCTATCAGCCCAGCAAAATGGGAGC
GGTGAATCTGCTGCGGTTTGTCCCCCAACCAGACGACCTGCATCACATTG
CTGCCGAAATCGAGTGGAAGCCATCGGCGGAGAGCAACTGCTATTTCGAC
ATGGTGTCGTATTCAACCAACAGCGTGAATATGGACGAGCCACTGGAGGT
GCAGTTCCGGGATCGCAAAAAGCTGTACAGGCACACGGTGGACAACTTGG
GAGTTTGACAAACAGTATCACGTTGGCGTAAGAACGGTGAACATAATGAA
TCGACTGGAGAGCGATCTGCAGTGGCTGCCAATCGCTGTTCCAAGCTGCT
TGGATTGGTATCCCTATAACTACACACTCTGCCCACCCCATAAGCCAGAG
AATCTTACTGTGACCCAAAGCAGTATCTGCCAAATATTTTGGCCCTGAAC
ATCACCTGGGCGCGTCCCAGATACCTGCCGATACTATACACCTTCACATT
CTTTGATCTATTCAAAGGAGTACGGAGCTTAACTATTCACTTGAACAAAA
GGACCACTTCTATGTACCCAGATCACCGAACTGGTCATTTCGAAGTAATT
GGTGGCCCAGTCGCCAGCGAAAACGTATTCGGGTTTGACGTGGACAGGTC
CTC
FMO07324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tor-RD | 3116 | CG1389-RD | 240..1392 | 9..1146 | 5155 | 97.4 | Plus |
| tor-RA | 3131 | CG1389-RA | 240..1392 | 9..1146 | 5155 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7708105..7708343 | 630..392 | 1195 | 100 | Minus |
| 2R | 25286936 | 2R | 7708495..7708726 | 392..161 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 7707737..7707905 | 883..714 | 800 | 99.4 | Minus |
| 2R | 25286936 | 2R | 7708792..7708945 | 162..9 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 7707477..7707668 | 1070..884 | 520 | 91.8 | Minus |
| 2R | 25286936 | 2R | 7707962..7708045 | 713..630 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 519..749 | 209..437 | 125 | 55.6 | Plus |
FMO07324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:07 Download gff for
FMO07324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tor-RA | 234..1374 | 2..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:19 Download gff for
FMO07324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tor-RC | 305..1445 | 2..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:38 Download gff for
FMO07324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tor-RA | 234..1374 | 2..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:38 Download gff for
FMO07324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7707737..7707905 | 714..883 | 99 | <- | Minus |
| 2R | 7707962..7708044 | 631..713 | 100 | <- | Minus |
| 2R | 7708105..7708342 | 393..630 | 100 | <- | Minus |
| 2R | 7708495..7708725 | 162..392 | 100 | <- | Minus |
| 2R | 7708793..7708951 | 2..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:07 Download gff for
FMO07324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3595242..3595410 | 714..883 | 99 | <- | Minus |
| arm_2R | 3595467..3595549 | 631..713 | 100 | <- | Minus |
| arm_2R | 3595610..3595847 | 393..630 | 100 | <- | Minus |
| arm_2R | 3596000..3596230 | 162..392 | 100 | <- | Minus |
| arm_2R | 3596298..3596456 | 2..161 | 97 | | Minus |
