FMO07401.5prime Sequence
1216 bp (992 high quality bases) assembled on 2008-10-22
> FMO07401.5prime
CAGTCGACATGCCGCAGCGTTCGCCATTTGCCATTCAGGAGCTGCTGGGC
TTGGCGGTGGCGGCGGCCACAGAAGCGCCAACCGATCTGACGACAACTGC
CGGTGCAACGGTGGCAAAAGAGCGCCAAACGCCAACGCCGCCAAAGACAA
CAAATGCCACAATGGCAACAGCAGCAACATCAGCAGCTACGGCAGCAACA
CCAACAAATGCGGCCGAAGGCAATTTAACGAGCGTTTCGGAGCCACAGCA
GCAGCCGCAGCAGCAGCAACAAGAGCAGCAGCACCACCAGCCGCACCACC
ATCAGTACAGGGAGCACCACCAAATGACCATGGCGGCCGCCTCGCGAATG
GCCTACTTCAATGCCCATGCGGCGGTGGCAGCGGCCTTTATGCCCCACCA
ACTGGCCGCGGCGGTGCACCATCATCATCAGCATCAGCACCAGCACCATC
CACACCACCACCCGCACCACCCACACGGAGCCGTTGGCGGGCCACCGCCG
CCGCCGCCGATGCAGCACCACCACCCCCACCATCCGCACCACCCGCTGCT
GCACGCGCAGGGATTTCCGCAGCTGAAAAGCTTCGCCGCCGGAGCCGGAA
CTTGTTTGCCCGGATCGCTGGCGCCCAAGGACTTCGGCATGGAGAGCTTG
AATGGCTTCGGTGTGGGACCGAATAGCAAAAAGAAGAAAAAGAAGCGACG
ACACAGCCGCACCATATTCACCAGCTACCAACTGGAGAAACTGGAGGAGG
CCTTCAAGGAAGCCCATTATCCCGATGTCTATGCCCGCGAAATGCTCTCG
CTGAAGACAGAGCTGCCCGAGGATCGCATACAGGTGTGGGTTCAAAACCG
ACGCGCCAGTGGCGCAAGACGGAGAAAGTCTGGGGCGGCAGCACGATCAT
GACCGAGTACGTCTCTATGGGCAATGGTGCGGCACTCGCTGCCTCTGCCG
GACACGATCCTAAGTCGGGCAAGATACGATGCGGTGCCGCCCTGCTACTA
GCATGCATCCAAGTCGATTGAGGCCCAGTCATGCCTCAAGGACGACTCGG
GGGTGACGAACAAAAGGAATCGAGGGAATCGAGTCGACCAACGGAGAACT
TCCGCTCCCGTTGCCAGGCCTAAGATCTCTCAACCGAATACGTGAACGCT
CTAGCTTGCAGATACGTCCCACTCGGCTAACCTCGTGCCGCAACTCCAAG
GCGATATATGCGGAGC
FMO07401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-RA | 2358 | CG33980-RA | 222..1368 | 9..1139 | 4940 | 96.4 | Plus |
| Vsx2-RB | 2373 | CG33980-RB | 222..1383 | 9..1139 | 4790 | 95.2 | Plus |
| Vsx1-RB | 3633 | CG4136-RB | 1460..1756 | 681..973 | 440 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5559409..5559962 | 562..9 | 2770 | 100 | Minus |
| X | 23542271 | X | 5546722..5546946 | 836..612 | 1125 | 100 | Minus |
| X | 23542271 | X | 5531278..5531447 | 994..831 | 480 | 92.4 | Minus |
| X | 23542271 | X | 5553454..5553506 | 613..561 | 265 | 100 | Minus |
| X | 23542271 | X | 5606708..5606863 | 681..836 | 255 | 77.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2665 | 113..460 | 350 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2544 | 49..300 | 340 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6882 | 150..322 | 309 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6916 | 148..323 | 298 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6953 | 91..306 | 295 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2474 | 104..323 | 275 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2467 | 110..304 | 248 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2908 | 60..580 | 245 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3026 | 128..560 | 236 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..3018 | 133..351 | 221 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2950 | 138..330 | 218 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7201 | 60..467 | 217 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6900 | 158..553 | 212 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2549 | 94..280 | 211 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2957 | 148..323 | 201 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7009 | 54..323 | 190 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1586 | 114..216 | 187 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2520 | 60..229 | 181 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1153 | 160..207 | 177 | 85.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7018 | 54..322 | 165 | 58.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1031 | 148..206 | 144 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1166 | 166..208 | 134 | 79.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10181..10296 | 167..280 | 133 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1119 | 116..206 | 129 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1596 | 133..206 | 124 | 64.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6757 | 166..317 | 123 | 60.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8213 | 166..317 | 123 | 60.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3238..3348 | 104..223 | 121 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1177 | 95..210 | 119 | 58 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9168..9222 | 153..206 | 119 | 70.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2073 | 142..197 | 118 | 67.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 152..192 | 166..206 | 115 | 75.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9182..9222 | 166..206 | 115 | 75.6 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2128 | 91..204 | 113 | 57 | Plus |
FMO07401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:54 Download gff for
FMO07401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-RA | 213..1295 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:10 Download gff for
FMO07401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 213..1295 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:16 Download gff for
FMO07401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 213..1295 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:16 Download gff for
FMO07401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5531270..5531444 | 834..1001 | 93 | <- | Minus |
| X | 5546725..5546945 | 613..833 | 100 | <- | Minus |
| X | 5553455..5553505 | 562..612 | 100 | <- | Minus |
| X | 5559410..5559971 | 1..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:10 Download gff for
FMO07401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5425303..5425477 | 834..1001 | 93 | <- | Minus |
| arm_X | 5440758..5440978 | 613..833 | 100 | <- | Minus |
| arm_X | 5447488..5447538 | 562..612 | 100 | <- | Minus |
| arm_X | 5453443..5454004 | 1..561 | 99 | | Minus |
