FMO07402.5prime Sequence
1011 bp (979 high quality bases) assembled on 2008-10-22
> FMO07402.5prime
CTATACGAAGTTATCAGTCGACATGATTATGCATGGTACCTGGTACAAGG
GACCTCAGTTGGCGCACCATCCTCACTCGAATCCGCATAACAGTTCGCAC
GGCCACAGTGACTACCACCAGTTCCGCTCGTACCCCTCGTTCGTTGTAAC
GCCCTACCACGATGGCCATGTCCAGGGCCCGGCCACGCCCACTCCATGCA
CGGCCCCGCCAACGCCCTGCAACGGTCCAGTTCCAGTTTCAGTTCCAGTT
TCGATTCCCGTCTGCCACACCGGCGGCCAAGGTTCGCCAGTAATTGTCGA
GAGCTCATTTGCAATCGCCGCCGCCGCCGCTGCAGCGGCTGCTGCCGTCG
CCGTCGGAGGATCCAGTGCCACGCCCCTGCTGCCCAGTCCGCCCATCAAG
ATCGAGCAGGTCTTTGGCGAGCCCTCTTCGCTTGGAGCCGTCGTTGAGGA
TTACGCGCTGGGACTAGATTGCCCCGTGGAACACACGTTTCGAAAGCCGC
ACAACAACAACGGTTACTCGTGGTCCACCGGCAACAACAACGAGGTTGTC
AGTCATAGCAGCAACGGCCACACCAACAACCACCCAACAACACCACCCAC
TCCGCCCAACGAGGCCAGCGCCACCCAAGCGACTTCAGTGTCCGCAATTA
ATTTGAATCAAGCCCAACCCGCATCACAGACGCGTTCAAACTTTGGCAGC
TCCATAAAGTCACCACCATCAGAACCCGGACGCGGTCACTGCTGCCACGT
GCAAAAGTCATGAGAATAACTCCGGCCAGAACCCCACCCCCAACTCCCTC
TCGATCACAACCGGCTCACAACCTTAACTCGAATTCACGGGCCGCGGCAG
CTGCCGGCGGATCCGCAACCCGGCAATGGACCGCCTCCACTCCAATCACG
CCCAGCATCAGCGCAACAACTGGGCTGCCCAGTCTCGATGCCCCAACGAC
ACGGCTACTGGCAAAGTAAGTCCGGACTCGTCGCTGCACCCACGCATGAA
GTGATGCCCAC
FMO07402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rn-RG | 5014 | CG42277-RG | 749..1572 | 23..845 | 4005 | 99.3 | Plus |
rn-RE | 5014 | CG42277-RE | 749..1572 | 23..845 | 4005 | 99.3 | Plus |
rn-RF | 4270 | CG42277-RF | 476..828 | 494..845 | 1650 | 98.3 | Plus |
rn-RG | 5014 | CG42277-RG | 2779..2945 | 840..992 | 435 | 89.2 | Plus |
rn-RE | 5014 | CG42277-RE | 2779..2945 | 840..992 | 435 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7307857..7308327 | 493..23 | 2355 | 100 | Minus |
3R | 32079331 | 3R | 7300824..7301176 | 845..494 | 1575 | 98.3 | Minus |
3R | 32079331 | 3R | 7275404..7275488 | 920..840 | 230 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:15 has no hits.
FMO07402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:50 Download gff for
FMO07402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rn-RB | 517..1334 | 23..838 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:38 Download gff for
FMO07402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rn-RE | 749..1566 | 23..838 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:51 Download gff for
FMO07402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rn-RE | 749..1566 | 23..838 | 99 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:51 Download gff for
FMO07402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7300825..7301176 | 494..845 | 98 | <- | Minus |
3R | 7307857..7308327 | 23..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:38 Download gff for
FMO07402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3126547..3126898 | 494..845 | 98 | <- | Minus |
arm_3R | 3133579..3134049 | 23..493 | 100 | | Minus |