Clone FMO07402 Report

Search the DGRC for FMO07402

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:74
Well:2
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07402.5prime Sequence

1011 bp (979 high quality bases) assembled on 2008-10-22

> FMO07402.5prime
CTATACGAAGTTATCAGTCGACATGATTATGCATGGTACCTGGTACAAGG
GACCTCAGTTGGCGCACCATCCTCACTCGAATCCGCATAACAGTTCGCAC
GGCCACAGTGACTACCACCAGTTCCGCTCGTACCCCTCGTTCGTTGTAAC
GCCCTACCACGATGGCCATGTCCAGGGCCCGGCCACGCCCACTCCATGCA
CGGCCCCGCCAACGCCCTGCAACGGTCCAGTTCCAGTTTCAGTTCCAGTT
TCGATTCCCGTCTGCCACACCGGCGGCCAAGGTTCGCCAGTAATTGTCGA
GAGCTCATTTGCAATCGCCGCCGCCGCCGCTGCAGCGGCTGCTGCCGTCG
CCGTCGGAGGATCCAGTGCCACGCCCCTGCTGCCCAGTCCGCCCATCAAG
ATCGAGCAGGTCTTTGGCGAGCCCTCTTCGCTTGGAGCCGTCGTTGAGGA
TTACGCGCTGGGACTAGATTGCCCCGTGGAACACACGTTTCGAAAGCCGC
ACAACAACAACGGTTACTCGTGGTCCACCGGCAACAACAACGAGGTTGTC
AGTCATAGCAGCAACGGCCACACCAACAACCACCCAACAACACCACCCAC
TCCGCCCAACGAGGCCAGCGCCACCCAAGCGACTTCAGTGTCCGCAATTA
ATTTGAATCAAGCCCAACCCGCATCACAGACGCGTTCAAACTTTGGCAGC
TCCATAAAGTCACCACCATCAGAACCCGGACGCGGTCACTGCTGCCACGT
GCAAAAGTCATGAGAATAACTCCGGCCAGAACCCCACCCCCAACTCCCTC
TCGATCACAACCGGCTCACAACCTTAACTCGAATTCACGGGCCGCGGCAG
CTGCCGGCGGATCCGCAACCCGGCAATGGACCGCCTCCACTCCAATCACG
CCCAGCATCAGCGCAACAACTGGGCTGCCCAGTCTCGATGCCCCAACGAC
ACGGCTACTGGCAAAGTAAGTCCGGACTCGTCGCTGCACCCACGCATGAA
GTGATGCCCAC

FMO07402.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
rn-RG 5014 CG42277-RG 749..1572 23..845 4005 99.3 Plus
rn-RE 5014 CG42277-RE 749..1572 23..845 4005 99.3 Plus
rn-RF 4270 CG42277-RF 476..828 494..845 1650 98.3 Plus
rn-RG 5014 CG42277-RG 2779..2945 840..992 435 89.2 Plus
rn-RE 5014 CG42277-RE 2779..2945 840..992 435 89.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7307857..7308327 493..23 2355 100 Minus
3R 32079331 3R 7300824..7301176 845..494 1575 98.3 Minus
3R 32079331 3R 7275404..7275488 920..840 230 92.9 Minus
Blast to na_te.dros performed on 2014-11-28 20:32:15 has no hits.

FMO07402.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:50 Download gff for FMO07402.5prime
Subject Subject Range Query Range Percent Splice Strand
rn-RB 517..1334 23..838 99 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:38 Download gff for FMO07402.5prime
Subject Subject Range Query Range Percent Splice Strand
rn-RE 749..1566 23..838 99 -> Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:51 Download gff for FMO07402.5prime
Subject Subject Range Query Range Percent Splice Strand
rn-RE 749..1566 23..838 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:51 Download gff for FMO07402.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7300825..7301176 494..845 98 <- Minus
3R 7307857..7308327 23..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:38 Download gff for FMO07402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3126547..3126898 494..845 98 <- Minus
arm_3R 3133579..3134049 23..493 100   Minus