FMO07403.5prime Sequence
1245 bp (1009 high quality bases) assembled on 2008-10-22
> FMO07403.5prime
CAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGCAGCAACTT
CTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTCCAGCCCCA
AAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGGTCAACAGC
AGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCAAGGGAAAA
CGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCGGACCAGGA
GTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCACATCTATT
CGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGGCCATGCGC
AACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGCCTGGGCGT
CCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAAGATCAACC
TGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGGGCAAGGCG
TGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAACCGTGTCG
CGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTCCGGCAATG
CCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTCCGGATCCG
AAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCGCTGGCTGG
AAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGCGGGTCTG
GTCAAGCAAGCGAAGCAACAACACAGTCTGATTAGCAAGGTTCTTAAGCG
TCCTGCTGTCAGCAATCCTCTGGCTCACACCCGCATTGGATATATATCAG
TATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTGCAGCTA
CCTGGATGACAGCACCACGGCGAGGAGCCATCAGTTGTCACATCCTCGAA
TTACGCACCAATTCTTGGCCACTAAGTGGATCCGAAGTCATCGCACCCCT
GCGAAACGGCAGCTAATTGTGTTTACGGTCAACCACCACCAATCACCTAT
AACTATCCCATCTTACCATGCAATTCAGCGCGCCACCGCGGCCACCTGTA
AACTTCTAATTTGCCTAGCTGCACAATTCGGAACTGGCGCATTACCAACA
TCCCTCACGGATACACTTGGCAAGGTGTTCGTTCAGGACACACATGCAGG
CATATCTATGAATCAGCCCGCCACTGGCCTACTCCGACACCGTGA
FMO07403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gcm2-RA | 2328 | CG3858-RA | 337..1472 | 9..1138 | 5095 | 97.6 | Plus |
| gcm-RB | 2173 | CG12245-RB | 288..659 | 248..622 | 375 | 74.8 | Plus |
| gcm-RA | 1911 | CG12245-RA | 288..659 | 248..622 | 375 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9610602..9611346 | 20..765 | 3665 | 99.7 | Plus |
| 2L | 23513712 | 2L | 9611561..9611768 | 857..1063 | 725 | 95.2 | Plus |
| 2L | 23513712 | 2L | 9611410..9611502 | 764..857 | 420 | 98.9 | Plus |
| 2L | 23513712 | 2L | 9581198..9581458 | 508..248 | 285 | 73.9 | Minus |
Blast to na_te.dros performed 2014-11-28 23:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2111..2210 | 873..972 | 130 | 64.1 | Plus |
FMO07403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:52 Download gff for
FMO07403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gcm2-RA | 420..1473 | 9..1063 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:44 Download gff for
FMO07403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gcm2-RA | 337..1390 | 9..1063 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:23 Download gff for
FMO07403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gcm2-RA | 337..1390 | 9..1063 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:23 Download gff for
FMO07403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9610600..9611346 | 18..765 | 99 | -> | Plus |
| 2L | 9611412..9611502 | 766..857 | 98 | -> | Plus |
| 2L | 9611562..9611768 | 858..1063 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:44 Download gff for
FMO07403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9610600..9611346 | 18..765 | 99 | -> | Plus |
| arm_2L | 9611412..9611502 | 766..857 | 98 | -> | Plus |
| arm_2L | 9611562..9611768 | 858..1063 | 95 | == | Plus |
