FMO07406.5prime Sequence
1242 bp (1047 high quality bases) assembled on 2008-10-22
> FMO07406.5prime
CAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTTTGTTAGCA
CTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGGTCAGAGAA
GGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCAGCTGGAGG
AGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGTGCGTGACG
GTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGCAAGGGTCT
GCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCTCCAGAGTC
AGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCCATTTGCGC
AAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATTGAACTGTC
CATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCATTGTGGACT
ATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCGATTACAAT
GCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTACATGGAATT
GGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTCGACGCCAG
CGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGTCGTCGTCA
TCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTGTCCTTTGG
CCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAGCAGCATTC
CCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATGGTGACCCC
ATCGATCCTAACGACACATGAACATGTCGCGTCTAACGCCGCCCGCCGAT
GCAGCGCCGGTGATGTACCACGAGCCGGCCTTTTGGTGTTCCATCTCCTA
CTATGAGCTAAATACGCGTGTCGGCGAGACGTTCCATGCCTCGCAGCCCT
CGATCACGTGGATGGCTTTACCGATCCCTCAATTCGGAGCGCTTTGCTCG
GACTGCTGTCTAATGTGAATCGCACGAGGTGTGGAGCAAACACGTCGCCA
CATCGGGCAAGGCGTACGGCTTTACTATATTGGCGGGTGAGAATCGCGAA
TGCTGGACCGATTCGTCTCAATTTCGGTACGAGCCTAATGGAATCAAGCG
AATTGGCTGGCCATCCGGGCCACGATGACAGAACGCCGTTGCACCTAGAT
CTCAAACAGAGTGTTGCCGCCCGTGTCTGTCGCAGAGCCTGC
FMO07406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smox-RB | 4521 | CG2262-RB | 880..2047 | 9..1168 | 5225 | 97.4 | Plus |
| Smox-RA | 3171 | CG2262-RA | 880..2047 | 9..1168 | 5225 | 97.4 | Plus |
| Mad-RB | 3262 | CG12399-RB | 811..893 | 240..322 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8139598..8140682 | 1086..9 | 5035 | 98.9 | Minus |
| 2L | 23513712 | 2L | 3148646..3148728 | 322..240 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:36 has no hits.
FMO07406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:55 Download gff for
FMO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 835..1944 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:45 Download gff for
FMO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 873..1982 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:04 Download gff for
FMO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 873..1982 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:04 Download gff for
FMO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8139598..8140687 | 1..1086 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:45 Download gff for
FMO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8033631..8034720 | 1..1086 | 98 | | Minus |
