FMO07407.5prime Sequence
1205 bp (1049 high quality bases) assembled on 2008-10-22
> FMO07407.5prime
CAGTCGACATGACTAAGATGATTCCGCCGGTTCCCACCGCCGCTGCAGCC
GTCATGATGCCCACACCAAAGCAGAAGATCGGTTTCAGCATCGAGTCCAT
TGTGGGCAATGATGTCAGCACCGCCGGCGGCAATTCGACGCCCGATCTAT
CCGGTCCCCAGAGTCCGCCGCCCGGCGAGCGCAATGTGCCCGGTTCGCCG
CCCCAAACGCCACCAGCCACACTCACCTTGATCCCAGGCTCGCCCCCGCA
CCATCTGATGGCTCCTCCTGCCCACGGACTGCCCTATCCGCATCCGCATG
CTCAGCAGCAGCATTTGCAGGCACCACATCCGCATCCGCATCTATCGCCT
GCGCAGCAACATGTGCTCCACCAGCACCTCCTCATGCAGCAGCAACATCC
GGGCACACCCAAGAGCCACCAGGACATTCAGGAGCTGCTGCAGAGGCTGC
ACCACAATGCCGCCATGGCCAGCGGCCTGAGTCCGCTGCAGACACGCCTC
TCCCCCGAAACGGAGCAGCCCCAGATGGCCGTCTCCCTCAAGCGGGAACG
CTCACCTGCACCACCTGCCATGGAGCAGGCCGAGAATCCCGCCCAGCGCA
TCCAGCCACCGCACACGCCTCCCAAATCCGTGAGCCCCCAGTCCTCGCAG
CCCTCGTCTTCGCCCACTCTGCTGATCAGCAGTCCACATGCCACACCGCC
ACAGCAGCAACAGCAGCAGCCGCCCCCGAATTATCCAAAGCCCGCCATGA
TGCATCCCGGAGGAGCTGGACCCATGATGATGCCGGGCATGCCGCCCGCT
GGACTCGTTCGCCCCTTTCCCATGGGACACGGAGGACCACCGATGCCGCA
GGTCAGCCCGGGCTTGCCGGACATCAAGGCGCTGCCGCCCTACATCAACG
CTCCGCCGGAGCTGCCGCCTCAGCACAATCCGCATCTCATTGCCGCTGCC
CAGTTCAGGATGGCCGCCGCCCTGCAAGCGGGTCATGTGCTTGGTTCAGC
GGCAGCGCCGCTGCTGCGCGGCTGCCGCCCATGCCGCCAGTTTATGCCAA
TCCAGGCATACAAGGAAGCTATCAGCTGTACCCTGGCTGCTCAACGGCAT
GAGATCTCCACAACGGAATCCCTGAAGTCAGTGCCGTACCGAACGACATC
GACGCTCCGCGTGCACGCTGACTGGACCAGCCTTGAGGACACACGTATCG
TAAGC
FMO07407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ems-RA | 2478 | CG2988-RA | 327..1422 | 9..1093 | 5065 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13902179..13903188 | 9..1017 | 4835 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 23:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6897 | 286..454 | 176 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6945 | 278..483 | 172 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6870 | 291..454 | 164 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6939 | 286..442 | 163 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2524 | 286..457 | 161 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2467 | 286..442 | 154 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2511 | 242..476 | 153 | 56.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1151 | 304..399 | 139 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2549 | 291..490 | 135 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6922 | 278..401 | 133 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6889 | 353..524 | 125 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2510 | 291..401 | 120 | 60.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7937..7992 | 675..730 | 118 | 67.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9381..9436 | 675..730 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6945 | 286..400 | 116 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6875 | 675..741 | 115 | 69.1 | Plus |
FMO07407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:57 Download gff for
FMO07407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ems-RA | 315..1427 | 3..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:35 Download gff for
FMO07407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ems-RA | 315..1427 | 3..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:58 Download gff for
FMO07407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ems-RA | 321..1433 | 3..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:58 Download gff for
FMO07407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13902173..13903285 | 3..1104 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:35 Download gff for
FMO07407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9727895..9729007 | 3..1104 | 97 | | Plus |
