FMO07408.5prime Sequence
1226 bp (1032 high quality bases) assembled on 2008-10-22
> FMO07408.5prime
CAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATAGTTTTGCG
GCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCATCATTTGGC
GGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGCGATGGCGG
CGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAGCGGCGGCA
GCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAATAGCAGTAA
CAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACATGGCGGAG
GTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCGCCTCTTCT
AGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACACAATTCCAG
TCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAGGAGCAGCG
GAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCACCGCCGCAG
GGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGGGCAAAGTT
CCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGCCAACCATG
CCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACCACAAGCTC
CCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCGATGACCAC
GGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGCAAATGGCT
TGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATCGCGGATCC
GGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACCAACAGCCA
GGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAAACCACCGC
CGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGGCATTCCCCGCT
TCTCGATCGCCGCCGCAGCAGCGGGAATGGCCCAGTATCTATCGCAAGAG
CAAGGGGCGCCACTGAAGACCCACGCCGAACCAATATGGAACTGCACCGC
ACTTGTACTTGACAGGAATACAGGAACTGGTGCCAATTCAATCGCGGTGG
CCGAACGATCTCCAACCAATGTTCGGCAATGTTCTATTCGATATCGACTT
ATATACATCGAGACAAGATTGCCAAAGAAACAACCGCCAAAATTAGTGAT
TCAGCAGAATCTCTTTCGCCCGTGTG
FMO07408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-RA | 3014 | CG13475-RA | 824..1952 | 5..1130 | 5150 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14597786..14598717 | 935..5 | 4595 | 99.8 | Minus |
| 3L | 28110227 | 3L | 14595930..14596077 | 1082..934 | 455 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:50 has no hits.
FMO07408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:59 Download gff for
FMO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RB | 269..1310 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:38 Download gff for
FMO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 820..1861 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:59 Download gff for
FMO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 820..1861 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:59 Download gff for
FMO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14595983..14596075 | 936..1028 | 97 | <- | Minus |
| 3L | 14597786..14598718 | 1..935 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:38 Download gff for
FMO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14589083..14589175 | 936..1028 | 97 | <- | Minus |
| arm_3L | 14590886..14591818 | 1..935 | 99 | | Minus |
