FMO07409.5prime Sequence
1204 bp (1013 high quality bases) assembled on 2008-10-22
> FMO07409.5prime
CAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGTTGGGGCGC
GACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCTGAGAAAAT
CATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGTCAAGTGGA
AGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAAACATCCTG
GATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCCTCCGGAAC
TCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGATCCGGAGC
CGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATGTGGACACG
CATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCGAAGAAGGA
GAAGAAGCACCATCACCACCACCACCATCATCACCACATCAAGTCCGAAC
GCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATCATCATCAC
CACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCCTCCTCGAA
CAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAGCAACTCCT
CCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAGCCGAGGTG
CTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCCCCAGATGG
CCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAGCCAGCAGC
AGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCGAGGCTGCA
ACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACAGAAGCCAT
AAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAAGAAGTAGCCAACG
AGGAAGCAACCACAGGCGCCACAGGTTCTTTCGGAGAACAATAACATACC
AAAACCGTGCAACACCTGGCTATCAACCAGAAACAGCGCTTACTCTCTTC
GCGGCTGCCCTTCCGCGCGCTTCTGCTGCGGCAAATGCAACATATCAACG
GGTGGTGATCACAGACGTCACCGTAACCCTGGAGACGGTACTAACGCGGA
TGCAGAAACGGACGCGGTTTTCGTGAGCGCGACATGGAAAGCCATTTCGC
TCGCGATACGGCAGCTTCTTGAGACTTCGTTGGCCCGCGGGCCCGAGGAG
GTGT
FMO07409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-RA | 2462 | CG32443-RA | 111..1266 | 9..1146 | 5125 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21316506..21317484 | 1086..121 | 4230 | 97.9 | Minus |
| 3L | 28110227 | 3L | 21317796..21317910 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:24 has no hits.
FMO07409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:00 Download gff for
FMO07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 67..1228 | 9..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:56 Download gff for
FMO07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..1272 | 9..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:32 Download gff for
FMO07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..1272 | 9..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:32 Download gff for
FMO07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21316435..21317482 | 123..1154 | 96 | <- | Minus |
| 3L | 21317797..21317910 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:56 Download gff for
FMO07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21309535..21310582 | 123..1154 | 96 | <- | Minus |
| arm_3L | 21310897..21311010 | 9..122 | 100 | | Minus |
