FMO07412.5prime Sequence
949 bp (890 high quality bases) assembled on 2008-10-22
> FMO07412.5prime
CAGTCGACATGGCACCCACAGCAAACACATTTTTTAATTACCGTGCCGCG
GACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCCCCCCTTA
CGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCCCACGCCC
TCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATAACATGGC
TGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTAACCTGGG
AGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGCCCAGACA
TCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACGAGATCAA
GGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGATAGCCTGC
AGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGACTCGGAG
CTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAACAGCAGCA
CAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCTGAGGGCT
GTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCCTCTGCCG
CAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGCTGGCGGA
GCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTTGTGGCCC
TCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTCGACGTCA
AGCGCCTCGAAGAGCTGGTCGAAAGTCTGCTCGCAGATATCACAGCAGAC
CTGGAAACAGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAGATGCAGGC
AACGCAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCAGACCGCTT
GGAATCCGACGGGCAATAGAGCTAATGGCCGCAAGCTTTTCTAGACCAT
FMO07412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xbp1-RD | 2138 | CG9415-RD | 327..1249 | 7..930 | 4475 | 99.1 | Plus |
| Xbp1-RE | 2119 | CG9415-RE | 331..1230 | 7..930 | 4120 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21144201..21144861 | 270..930 | 3180 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21143875..21144137 | 7..270 | 1225 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 23:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 453..540 | 172 | 67.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 409..533 | 150 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 433..538 | 138 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 428..534 | 132 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 426..547 | 130 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 479..521 | 127 | 79.5 | Plus |
FMO07412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:47 Download gff for
FMO07412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xbp1-RC | 324..1261 | 1..938 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:32 Download gff for
FMO07412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xbp1-RD | 320..1257 | 1..938 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:56 Download gff for
FMO07412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xbp1-RD | 320..1257 | 1..938 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:56 Download gff for
FMO07412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21143868..21144136 | 1..269 | 97 | -> | Plus |
| 2R | 21144201..21144869 | 270..938 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:32 Download gff for
FMO07412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17031373..17031641 | 1..269 | 97 | -> | Plus |
| arm_2R | 17031706..17032374 | 270..938 | 98 | | Plus |
