FMO07413.5prime Sequence
1240 bp (1020 high quality bases) assembled on 2008-10-22
> FMO07413.5prime
ATAAAACGAAGTTATCAGTCGACATGGAGGACCTGTGTCGAATAAGGGGC
GGGGCCTCGGAAAACATGCTGGGCATTTTCGACGATCAGGTGGAAGAATA
TGTTGATGGAGCCAAGCTCGCTGAGATGGTGAAGACATGTGCCGACGTGC
AGTTGGATCCCGACGACGCTATGCCCCAAAAAATGTGCATTTCCTGTGTC
CACGATGCACGAACTGCTTACGGATTCAAGCGAAGATGCGAAGAGAACTA
CAAGAAGTTCTATTTGGCGATATTAAATGGGCAGGTCATCAAGGACGAGC
CCAACGAGGAGGATTTCCTATTCATTGAGAACCCAGACAAAGGCAATCTG
GAAGCAAAGAAGAAACTCAACAAGGAAATTAAAAAGACACATCAAACAGC
TTCCAGAACAACCAAGTCTTCCATAACAACCAGTAGAGCTGGCAGACAGC
TAAGGAGTATAAAGAATCAGACTTTCAAATGCGAACTATGCATCAAACAG
TTCAAGCGCCAAATAAACCTCCTGGACCACATGAAGGTTCACAGCAATTC
ACACGTATGCCAAAACTGCGAAGAGCGTTTTCTGTTCAAGGCCGATCTGG
ATAACCACCAATGTTATCGCAATAGCAATTCCACCGTCGAGTGCCCGGAA
TGCTTAAAGGTCTTTTCAAGCACCCAGAGCCTGGACAGCCACAAATGCAA
GGATATGCAGGAGCGTTCGCCCTTTCAGTGCCCCCACTGTCAGCAGGCCT
TTACTCGCGAACAAAACCTCAAGGCGCACCTGTTGATCCACGCGGAATCG
AAACAGGAAACGGACCCCACAAATGTTCATACTGCCCAAACGGGATTCTT
CAACAAGTCGGCCCTCAAGTGCACATCCATGCGCACATGGGCGAACGGCC
GCATGCCTGTCCCTTCTGCGTGTCCAACTTCCGTTCAAGCAGGCCCTTAA
GGTCCACATCCGCATACACACGGGCGAAGAAGCCCTACCAATGCCCCCAC
TGCCCCAAGACTTTTTCCGGAAATCAATTACCTGCCGAAGCAACCGACGA
CGCCACTCGGATGAACGACCCTACAAGTGTCCATCTGCCTGCAGGACCTC
CGGAAGAAAACACCATTCTGAAGCCGGCACTTTCTCTGGCAGCATTCGGA
ATGGAATCAAAAAACTCTAAAGCTAAGGCAGCTCCGATCATTCGTGGGCC
CGGGCCAGGATAGGTGTACATAAATACCAATTAAACTCTA
FMO07413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-RA | 1295 | CG8319-RA | 78..1213 | 24..1162 | 5155 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9627398..9627910 | 24..536 | 2520 | 99.4 | Plus |
| 3R | 32079331 | 3R | 9627971..9628544 | 536..1109 | 2385 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:49 has no hits.
FMO07413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:05 Download gff for
FMO07413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1191 | 10..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:44 Download gff for
FMO07413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1191 | 10..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:42 Download gff for
FMO07413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1191 | 10..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:42 Download gff for
FMO07413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9627389..9627909 | 10..535 | 98 | -> | Plus |
| 3R | 9627971..9628532 | 536..1097 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:44 Download gff for
FMO07413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5453111..5453631 | 10..535 | 98 | -> | Plus |
| arm_3R | 5453693..5454254 | 536..1097 | 97 | == | Plus |
