FMO07415.5prime Sequence
1221 bp (1020 high quality bases) assembled on 2008-10-22
> FMO07415.5prime
CAGTCGACATGTCGTCGACATCGACGGCTGCAGCGAACGCAGCGCCAGCG
AAGACGGAGGTGCGGTACGTGACCGAGGTGCCCAGCAGTCTGAAGCAACT
GGCGCGCCTCGTGGTCCGTGGATTCTATTCCCTGGAGGATGCGCTTATCA
TCGACATGCTGGTGCGGAATCCCTGCATGAAGGAGGACGACATCGGCGAG
CTGTTGCGCTTCGAGAAGAAGCAGTTAAGGGCCCGGATAACCACGCTGCG
CACCGACAAGTTCATCCAGATCAGGCTTAAAATGGAAACGGGGCCGGATG
GTAAGGCGCAGAAGGTCAATTACTACTTCATCAACTACAAGACCTTCGTG
AACGTGGTGAAGTACAAGCTGGATCTCATGCGCAAGCGTATGGAGACGGA
GGAGCGTGATGCCACCAGTAGAGCAAGTTTTAAGTGCTCTTCGTGTTCCA
AAACATTCACGGACCTCGAAGCGGACCAGCTGTTCGACATGGCCACGCTG
GAGTTCCGGTGCACCTTCTGCGGCAGTTCCGTGGAGGAGGACAGCGCCGC
CATGCCCAAGAAAGACTCCCGCCTAATGCTAGCGCACTTCAACGAGCAGC
TGCAGCCACTGTACGACCTGCTCCGTGAGGTGGAGGGCATCAAGCTGGCG
CCAGAGGTGCTCGAACCGGAGCCCGTGGACATCGACACCATTCGAGGACT
GAACAAACCCAACGCCACGCGACCGGACGGCATGGCGTGGTCGGGTGAGG
CGACGAGAAACCAGGGCTTTGCCGTGGAGGAAACTCGTGTGGACGTCACC
ATTGGCGGCGACGACACCTCGGATGCGGTGATTGAGCGCAAGTCGCGCCC
CATTTGGATGACAGAGAGCACTGTGATAACCGACACGGATGCTGCCGATG
GCGCGGCCGATGCGGTGCAGACGGCAGCGGATCTGGGCATCGCAACCGAA
AGGAAAACGAGGACATCATGTCCGTGCTGCTGCAGCATGAGAGCAGCCGG
GCCAGAAGGAGCCGCATATGAAGGTATGCGAGTGGGCTCATCGAACGCCA
ACTCTAGCGATTTCAGCGACGACGATGGACTTCGAAATCAGATTCTGGAT
GTCACTCGACATATATTCACTCCAATTCCCGGAGGAGAGGACGACAATGT
GCCATGGCTATGACTTGAGACCGATCCGCTCGACCATTGGGGCAACCACC
TCTGGTTAACCCACAGTTAGA
FMO07415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEalpha-RA | 1622 | CG10415-RA | 197..1392 | 9..1186 | 5310 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11682312..11683381 | 9..1075 | 5185 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 1844..1908 | 241..179 | 113 | 66.2 | Minus |
FMO07415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:09 Download gff for
FMO07415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 203..1278 | 1..1075 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:16 Download gff for
FMO07415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 191..1266 | 1..1075 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:09 Download gff for
FMO07415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 191..1266 | 1..1075 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:09 Download gff for
FMO07415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11682306..11683381 | 1..1075 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:16 Download gff for
FMO07415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11675406..11676481 | 1..1075 | 99 | == | Plus |
