FMO07418.5prime Sequence
1235 bp (1027 high quality bases) assembled on 2008-10-22
> FMO07418.5prime
CAGTCGACATGACGTCGCTGGACCCGGCGCCAAACAAAACGTGGGAGCTG
TCGCTGTACGAGCTGCAGCGCAAGCCGCAGGAGGTGATCACGGACAGCAC
GGAAATCGCGGTGTCCCCGCGGAGCCTCCACAGCGAACTGATGTGTCCCA
TCTGCCTGGACATGCTGAAGAAGACGATGACGACGAAGGAGTGCCTGCAC
CGCTTCTGCTCCGACTGCATTGTGACCGCCCTGCGTTCGGGCAATAAGGA
GTGCCCCACGTGCCGCAAGAAGCTCGTCTCCAAGCGCTCCCTGCGCGCCG
ATCCCAACTTCGACCTGCTCATCTCGAAGATCTACCCCAGTCGCGAGGAA
TACGAGGCCATCCAGGAGAAGGTGATGGCTAAGTTCAACCAGACGCAGTC
GCTGCAGGCGCTGGTCAACTCCATCAACGAGGGCATCAAGCTGCAGTCCC
AGAACCGGCCACAAAGATTCCGCACCAAGGGCGGCGGCGGTGGTGGTGGT
GGAGGTGGTAATGGAAATGGTGCTGCCAATGTCGCAGCTCCGCCTGCACC
TGGTGCACCCACTGCTGTGGGTCGCAATGCCTCCAACCAAATGCACGTCC
ACGACACAGCCTCCAATGATAGCAACAGCAATACCAACAGCATTGATCGC
GAGAACCGGGATCCGGGTCATTCGGGCACATCGGCAGCATCGGCCATAAC
GAGCGCCTCGAATGCTGCGCCCTCGTCGTCGGCAAACTCGGGCGCCAGCA
CATCCGCCACTCGGATGCAGGTGGACGACGCTTCCAATCCCCCCTCGGTG
CGGAGCACTCCGTCACCAGTGCCCTCCAACTCGAGCAGCTCCAAGCCGAA
GCGCGCCATGTCGGTGCTGACTTCGGAGCGGTCCGAGGAGTCCGAGTCGG
ATTCACAGATGGACTGCCGCACCGAGGGTGACTCACATCGACACAGAGGG
CGAGGGCATGGCGAGCTGGGCATCAACGATGAAATCGAGCTCGTCTTCAA
GCCCCATCCCACGGAAATGTCGGCGACAACGGCTCTACGGGCACTCAAGG
AGAACGGTGGTGCGCACATCAAGACCAAGGCAAATGCCACCGGTCGATCA
ATCTCAGCAAGATACTGGCCATGCGGGTTCACGCTGACCTGGAGCCGAAT
TGCCCAAGCTTGTCCGGGTCACTTTGACCTTCAAGCTTCGCCTCCAGCCC
AGGATGGGTTACTCTGGATGCACACAGCCGTGTGC
FMO07418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 115..1265 | 9..1154 | 5295 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27680794..27681915 | 1126..9 | 5045 | 98 | Minus |
Blast to na_te.dros performed 2014-11-28 20:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 614..656 | 111 | 76.7 | Plus |
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 557..596 | 147..186 | 110 | 75 | Plus |
FMO07418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:14 Download gff for
FMO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 104..1254 | 3..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:01 Download gff for
FMO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..1259 | 3..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:07 Download gff for
FMO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..1259 | 3..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:07 Download gff for
FMO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27680771..27681921 | 3..1148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:01 Download gff for
FMO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506493..23507643 | 3..1148 | 97 | | Minus |
