FMO07419.5prime Sequence
1234 bp (1036 high quality bases) assembled on 2008-10-22
> FMO07419.5prime
CCTATACGAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGC
GGAGTGAGCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGG
CGAGAGCAAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTAC
TGCCCAACGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAG
GTGTCCGAGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGAT
ATACGCCACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCT
CCTGGCCGGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAAC
GATGTCGGTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAG
CCAACCCATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGAC
AGTCACCCGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGAT
GAGGACTACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGAC
CCGGAGTGGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGA
AAAGAGGAACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTC
AAGCGGGGACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTT
TTGCAAAGAGGACGAGGAACTGATCAAGCGCTACATAGTCATGGGCTGCG
AGCTGTGCATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACTTC
AAGGACAAGCATCCGGACGAGCGGCCCTACATCAAGTGCTGCGGACGCAA
GCTCAACAAGCGCTGCCTCATCCAGGAGCATGCGAGGAGGCATGAGAATC
CCGAGTACATCAAATGCAAGGACTGCGGAAGGTGTTCGCCAATTCCAGCG
TATTGCGTGCCCACTGGCTGGTCCACCATGTTCCAGACGAGGAGTGCGAC
TTCCAGTGCGAGGACTGCGCAAACGCTTCTCGCGACGCACTGCTCGAACT
GCACAGGCTCCATGTGGCCGTAATGACGCAGTTCATTCTGCCCCCATGCC
AAACCATGCTTTGCCACGGAATTACACATGGCAGTTCATCACATGGCACA
CGCAGGCGGCCAATTCTGCATGTTGCGCAGAATCGGCATAGGCTGTCTTT
CGAAGACGTTTGCCCTCTCCTTTCAGATAAGCTC
FMO07419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-RA | 1894 | CG33133-RA | 73..1198 | 20..1130 | 5150 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21010879..21011647 | 913..145 | 3845 | 100 | Minus |
| 2R | 25286936 | 2R | 21011720..21011849 | 149..20 | 635 | 99.2 | Minus |
| 2R | 25286936 | 2R | 21010671..21010816 | 1055..914 | 565 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:35 has no hits.
FMO07419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:15 Download gff for
FMO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 64..1135 | 14..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:27 Download gff for
FMO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 66..1137 | 14..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:42 Download gff for
FMO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 66..1137 | 14..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:42 Download gff for
FMO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21010671..21010816 | 914..1055 | 97 | <- | Minus |
| 2R | 21010879..21011645 | 147..913 | 100 | <- | Minus |
| 2R | 21011723..21011852 | 14..146 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:27 Download gff for
FMO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16898176..16898321 | 914..1055 | 97 | <- | Minus |
| arm_2R | 16898384..16899150 | 147..913 | 100 | <- | Minus |
| arm_2R | 16899228..16899357 | 14..146 | 96 | | Minus |
