FMO07420.5prime Sequence
1209 bp (1011 high quality bases) assembled on 2008-10-22
> FMO07420.5prime
CAGTCGACATGGAACACGATAGCTTCGATGATCCCATTTTCGGGGAGTTC
GGCGGCGGGCCACTCAATCCACTGGGCGCCAAGCCACTGATGCCCACCAC
AACGGCCATGCATCCCGTGATGCTGGGCAGTGTCCACGAGTTGTGCAGCC
AACAGCAGCAGCAGCAGCAGCAGCAACGATTGCCCGACTGCAACACCATA
CTGCCGAATGGCGGAGGAGGAGGAGCAGGATCTGGCGGCGCTGGAGGATC
GCCCAACTATGTGACCAAGCTGGATTTTGTCAACAAGATGGGCTGCTACT
CGCCCAGCCAGAAGTACGAGTACATTAGTGCGCCGCAAAAACTGGTGGAG
CAGCAGCAGCAGCAGCAGCATCATCATCAACATCATCAGCACTACACGGC
CACGCCCCCGCCCAGCCACAATGGCATCCTGCTGCACAAGCAATCCTCCC
AGCAGCAACAGCAGCAGCAGCAACAGCTGGTGGGCATCCTGGACTATCAT
CCGCTCAATGGCAAGCTGGACTACTCCTCGTCGCCCAAAGATCAGTACGA
GCCGCAGCAGCTGCAGCATCTGTACGGCGGCAGTCCGCATCATCTGGACC
ATTTGGATCATGGCAGTGATGGCTTGCTCCAGGACTCCTCGCCCGTCATG
ATCAACGGAGGATCCGCTGGTGGCAAGCTAAAGAAGCCCGATGAGATGTG
TTCGCAGTTGGAGGCGGGTGGTGCTGGAGTTACTCCGCCAAGTAGTTCCT
CCACGGTGGTTATGGCACCACCAATGGCACTGGCAACGCCAACTCCTCCT
CCTCCGCTGGCGTCGGCATTCAGGGGGCGGCGGGCACAGCGGGGGGCGTG
GCAGCTCCTGCAGCCAAAAAGGACGGAAGCAGCAGCAAGAAGAGGGCGAT
CCCAATGGCATCAAGAAGAAGAAGACGAGACCACCTTTAACTGCCTACCA
GCTGGAGGAGTTGGAGCGTGCCTTTGAACGTGCTCCGTATCCGGATGTTT
TCCGCCCGCGAGGAGCTGGCAATCAAGCTGAATTCTTGACCGAATCCCGT
GTGCAGGGTGGTCGAACGAACGGTCCAGTGGAGCAGAGAGCACCGGCAGA
AGGGCTAAATCAGACGAGACCTCGGCGAGGCGGACCTGATTCTGAACTAG
TCTCATTCCTAGCTCCGTGAACAGAAACGATACGCCTCCGCGGGAGATCA
GTGTACATG
FMO07420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| repo-RA | 2996 | CG31240-RA | 306..1359 | 9..1062 | 5060 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18236497..18237419 | 9..929 | 4515 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18237845..18237959 | 940..1057 | 430 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:08 has no hits.
FMO07420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:17 Download gff for
FMO07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| repo-RA | 297..1365 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:54 Download gff for
FMO07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| repo-RA | 297..1365 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:51 Download gff for
FMO07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| repo-RA | 299..1367 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:51 Download gff for
FMO07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18236490..18237419 | 1..929 | 99 | -> | Plus |
| 3R | 18237835..18237973 | 930..1071 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:54 Download gff for
FMO07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14062212..14063141 | 1..929 | 99 | -> | Plus |
| arm_3R | 14063557..14063695 | 930..1071 | 91 | | Plus |
