FMO07421.5prime Sequence
1230 bp (1038 high quality bases) assembled on 2008-10-22
> FMO07421.5prime
CAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGTACCGCTGG
GAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGACGAGGATGG
GATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAAACGCCAGA
GGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGCGCCACATG
TTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGATTTGAAACC
CACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTATCGAGGAGT
TCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGCTAAAAGCT
AAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGCGTGCACCT
CAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGAGCCTTCGC
TGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGGTGCCGTCG
CACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACCACATGTGA
TCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGAGGGCATAC
GCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCCGCTACCTC
ACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGATGCACATTT
TCGGGATCAACTCATGTCTCAGTAGATCCACCGCCCGCCGCTAAGACTCA
GCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGAATGAAGTTG
AGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATAGAGAACTTG
GAGGAGCCCAGTGAACTGACCACTACTGGCCACCACTGCCCGCAATGCAC
AGCAAGTACTGCGAGCTGCCCGTGAGTGCCAGTCTTGCGGCTCACCCTGG
TCTCCGCGCCGCACTTGGCGCGTTCCTACCACCACCTTTCCCGGTGCCAA
ATTTGAGGAACTGCCGTTGGAGGCCATGCTGCTTCGTCATCCGACCTCAC
CACGGATGTCAGGGATGTTACGCTGGGCTAGCTCTTGGGCAAGCTGACAG
TCGCGAATAAAGTCGCTCTTCGAATGCGTTTCTGCAGCAGTCTTCCGCGT
GAACTGGCAAACCTTCATTCCGACCTGCAGCCTGCGTGGAGTGCCAACAT
TCCGGCTAACCGCCGGGTTTACACACAAAG
FMO07421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssl1-RB | 1613 | CG11115-RB | 121..1324 | 9..1189 | 5185 | 96.5 | Plus |
| Ssl1-RA | 1713 | CG11115-RA | 221..1424 | 9..1189 | 5185 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22879876..22880534 | 414..1065 | 2885 | 98.3 | Plus |
| 3L | 28110227 | 3L | 22879483..22879825 | 73..415 | 1715 | 100 | Plus |
| 3L | 28110227 | 3L | 22879366..22879431 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:37 has no hits.
FMO07421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:18 Download gff for
FMO07421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssl1-RA | 218..1325 | 2..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:40 Download gff for
FMO07421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssl1-RA | 218..1325 | 2..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:29 Download gff for
FMO07421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssl1-RA | 218..1325 | 2..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:29 Download gff for
FMO07421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22879363..22879430 | 2..73 | 94 | -> | Plus |
| 3L | 22879484..22879825 | 74..415 | 100 | -> | Plus |
| 3L | 22879878..22880575 | 416..1099 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:40 Download gff for
FMO07421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22872463..22872530 | 2..73 | 94 | -> | Plus |
| arm_3L | 22872584..22872925 | 74..415 | 100 | -> | Plus |
| arm_3L | 22872978..22873675 | 416..1099 | 97 | | Plus |
