FMO07422.5prime Sequence
1190 bp (1018 high quality bases) assembled on 2008-10-22
> FMO07422.5prime
CAGTCGACATGGATGTGGACAAGATCTGTCTTACCTGCCTGAGTTCCACG
GGACCACTCCTGTCCATCTACGACGGCGGATCCGGCAGCTGCCTGGCGGA
CATGATCCGGGAGTTCACAAAAACCAAGCCCCGCCGCAACGATAATCTGC
CCGAGAAGGTGTGCCTAAGCTGTTTGAGTGAAATCTCCAATTGCTATACC
TTCAAGATCAAGTGCGAGAACTCCAGTCGCACCCTGCGCCAATTGCTGCC
GAATGCGTTGCCGGAGGAGCCCGATAGCAAGGTGTCTATCAGTTGTCCAG
TGGCCACGACGGACCAGGCTGTGCAGACCACTAGCTGGGAGCCGGACAGA
TGCACAGCCTCCGTGCAAACGGACGCAGTGACTACCACAGACGCCGAACA
GAATACCAGCCTGATTAAGTCAACGATTTCAGTGGACCTGGACTACGAAG
GCGAGGGCGAGGTATTCGATTACGAGCTGCCGGATGAGCCCGTCGAAAAG
ACCACCAGCCTCATCCTGCAGGTCCAGGGGAACTTGAAGGACGAAAAGGA
AGTTGTGTTTACCCAAACCAATGTTATTTACGAAGGCGACGACCACGAGC
TGGAACAGCAGATCAGGGAATGTAACCTGGCCATCTTCGAAGGTGTCGAT
AACGAGGCGGAGATCATCACAGTAACCGCTCCGCAGGTAACCACCAGAAA
GAGCGCTGCCAAGCTTCTAACGCAGCAGGAAAACGATAAGCATCAGACTC
CTGTGGGTTCTAAGGAGGAAGCACGCGAATTAGAGAAGGACAAGTACCTC
AGTCGGCTAAGCGCATCCTCACGGCGTCGCGGAGTTGTCAAGCAGATGTA
CCGGCTACACCGCCGTCAGATGCAGAGCCTTCCCCCAAACAGCATCGGTT
AGGACACAGCGAAACTCAGCGCGCCAGAGCGGGACAGTAAACGGGCCAGC
ACACGTCAGGAGCAGCTACTACCCTGAGCTCAATATCACCTGTGATCGTT
GCAATGCGGATTCGCGGTGAGAAATTCGTTGATGATTCCACAGCGCCGAA
GGCTGCATTATCGCACTACAGTGCATGAGTGCAAGTCTTCATCCCCGATC
ACTTGCGAACCAGCAGTCCATGGGCCCATTGCCGAAGTGGAATTGTGTAT
CAGAGGACTACAGCACTGGTGCGAGCCAGGATATCTCTCG
FMO07422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 70..1162 | 5..1082 | 4890 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15212484..15213404 | 1036..125 | 3910 | 97.7 | Minus |
| 3R | 32079331 | 3R | 15213466..15213589 | 128..5 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:26 has no hits.
FMO07422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:02 Download gff for
FMO07422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 10..1104 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:38 Download gff for
FMO07422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 68..1162 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:07 Download gff for
FMO07422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 68..1162 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:07 Download gff for
FMO07422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15212512..15213400 | 129..1009 | 98 | <- | Minus |
| 3R | 15213466..15213591 | 1..128 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:38 Download gff for
FMO07422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11038234..11039122 | 129..1009 | 98 | <- | Minus |
| arm_3R | 11039188..11039313 | 1..128 | 97 | | Minus |
