FMO07424.5prime Sequence
1159 bp (1016 high quality bases) assembled on 2008-10-22
> FMO07424.5prime
CAGTCGACATGAAAGACTCGATGAGCATACTCACCCAAACGCCCAGCGAG
CCAAACGCAGCGCATCCCCAGCTGCACCACCACCTCAGTACGCTGCAGCA
GCAGCACCACCAGCACCACCTCCACTACGGCCTGCAGCCACCGGCGGTGG
CTCACAGCATCCATAGCACCACCACCATGTCCTCCGGCGGCAGCACCACC
ACCGCCTCGGGCATCGGTAAGCCCAATCGGTCCCGCTTCATGATCAACGA
CATTCTGGCGGGCAGTGCGGCGGCCGCTTTCTACAAGCAGCAGCAGCATC
ACCAGCAGTTGCACCACCACAACAACAACAACAATTCGGGCTCCAGCGGC
GGCAGCAGTCCCGCTCACAGCAACAACAACAACAACATTAATGGCGATAA
CTGTGAGGCATCCAATGTTGCTGGCGTCGGTGTGCTGCCATCTGCCCTGC
ACCACCCACAACCACATCCGCCCACGCATCCGCACACACATCCGCATGCG
CTAATGCATCCGCACGGCAAGCTGGGGCACTTTCCACCCACCGCCGGCGG
CAATGGGTTAAACGTGGCTCAATATGCGGCGGCCATGCAACAGCACTATG
CCGCTGCTGCTGCCGCGGCTGCTGCGCGCAACAATGCAGCTGCTGCTGCA
GCCGCCGCTGCTGCCGCTGCAGCTGCTGGTGTAGCCGCACCACCCGTCGA
CGGGGGAGTGGATGGCGGGGTGGGGCTGGCGCCACCGGCGGGCGGCGATC
TGGACGACAGCAGCGATTACCACGAGGAGAACGAGGACTGCGACAGCGGC
AACATGGACGATCACAGCGTTTGTAGCAATGGCGGTAAAGATGACGATGG
CAACAGTGTCAAGAGCGGCTCCACCAGCGACATGAGCGGTCTGAGCAAAA
GCAGCGAAGGCGCGTACCGCCTTCACGGATCACCAGCTGCAGACGCTCGA
GAAGTCCTTCGAGCGGCAGAAGTACCTTAGCGTTCAGAACGCCAGAGCTG
GCCACAGTGGGATCTGGACGATTGCCAGTGAAAACTGGTACAAACGCGAC
CAAATTGAAGCGCCAACAGCATGGGCTTGACTCCTGCCGAAGGCTGAAAC
TTTCGGGCTTACACGACTTAACGGCGAATCGCCTTTACTGGACGTGGCGA
TAGCGGCAT
FMO07424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B-H1-RA | 2719 | CG5529-RA | 217..1363 | 9..1135 | 5030 | 97 | Plus |
| B-H1-RB | 2724 | CG5529-RB | 217..1368 | 9..1135 | 4970 | 96.6 | Plus |
| B-H2-RB | 3142 | CG5488-RB | 1458..1553 | 894..987 | 385 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17397694..17398517 | 9..832 | 4120 | 100 | Plus |
| X | 23542271 | X | 17401464..17401622 | 831..987 | 695 | 98.7 | Plus |
| X | 23542271 | X | 17320940..17321020 | 907..987 | 360 | 96.3 | Plus |
Blast to na_te.dros performed 2014-11-28 21:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2407 | 272..387 | 231 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2455 | 286..387 | 188 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2492 | 286..391 | 188 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2448 | 286..401 | 184 | 65 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3382 | 268..391 | 183 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2853 | 161..694 | 164 | 53.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2874 | 281..383 | 147 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2681 | 24..335 | 141 | 51.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1608 | 286..337 | 121 | 72.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 951..1009 | 261..319 | 115 | 66.1 | Plus |
FMO07424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:03 Download gff for
FMO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H1-RA | 187..1174 | 1..987 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:38 Download gff for
FMO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H1-RA | 210..1197 | 1..987 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:27 Download gff for
FMO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B-H1-RA | 210..1197 | 1..987 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:27 Download gff for
FMO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17401465..17401626 | 832..993 | 96 | -> | Plus |
| X | 17397687..17398516 | 1..831 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:38 Download gff for
FMO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17291720..17292549 | 1..831 | 99 | -> | Plus |
| arm_X | 17295498..17295659 | 832..993 | 96 | -> | Plus |
