FMO07427.5prime Sequence
1202 bp (1051 high quality bases) assembled on 2008-10-22
> FMO07427.5prime
CAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTG
TCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCG
CATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCC
AGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTAC
ATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCA
GCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCG
GCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGC
ATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGC
CTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCAC
GCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCG
CAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAA
GGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTT
CGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAAC
AACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGT
GGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGC
TGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTAC
ACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAAC
ACAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACA
CGCGAGGCTTATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAG
CCACCACTATGCTGAAGGTTTCCCTTACTGCCCGTTGGGCAGAATGAAAT
GTTGCTGCCCTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGATG
CCAGTTCTTACTGCAATATGACGTTAGCCCAGTGGACTGTCCTGTATGCG
ACCAAGCCGGTCATTATGACACCTGGGTCAGAAGGCCACTTCAGAGGGTT
GGACTCTCCTTCTAAGAGTAGTGATCTGTGATACACTTCTCTCTCGAGAG
TG
FMO07427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RM | 2149 | CG8068-RM | 343..1471 | 9..1126 | 5215 | 98.1 | Plus |
| Su(var)2-10-RN | 2414 | CG8068-RN | 343..1471 | 9..1126 | 5215 | 98.1 | Plus |
| Su(var)2-10-RL | 2150 | CG8068-RL | 343..1471 | 9..1126 | 5215 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9117190..9117852 | 9..671 | 3315 | 100 | Plus |
| 2R | 25286936 | 2R | 9117917..9118156 | 672..911 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 9118215..9118360 | 912..1055 | 585 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:41 has no hits.
FMO07427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:52 Download gff for
FMO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RC | 598..1735 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:43 Download gff for
FMO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RK | 567..1704 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:31 Download gff for
FMO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RL | 337..1474 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:31 Download gff for
FMO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9117184..9117852 | 1..671 | 99 | -> | Plus |
| 2R | 9117917..9118157 | 672..911 | 99 | -> | Plus |
| 2R | 9118215..9118358 | 912..1053 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:43 Download gff for
FMO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5004689..5005357 | 1..671 | 99 | -> | Plus |
| arm_2R | 5005422..5005662 | 672..911 | 99 | -> | Plus |
| arm_2R | 5005720..5005863 | 912..1053 | 96 | -> | Plus |
