FMO07428.5prime Sequence
1214 bp (1033 high quality bases) assembled on 2008-10-22
> FMO07428.5prime
CAGTCGACATGTCTACGGGCCTAAAATGTCGCAATTGCGGATCCAACGAG
ATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAACTGCGGCTC
GGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGAGGAAGTTG
GCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGTCGTCGGGC
GGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCGGGCACCGA
ATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCACACTACTCT
GCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTCTGAATTTC
TTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAGAGCACCCA
CATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGGCACCTCCC
ATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCTATGAGCTT
GGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAACATACCTTC
TCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACTGCAGTTGG
GTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTGTCCAGCGC
ATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGCCTTTGTGG
AGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCGCACCATGC
TGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCCGAAAGCGT
CTTTCGGAGTTTGCTGAAACGCCCTCGGGAGGGCTAACCCTGGGAGGAGT
TCATGACCGTTGACTTGGAGCGCGAACAGGATCCGCCTTCCTTTAAGGCA
GCACGCAAAAAGGATCGTGAGAGATCAAAGATATGGGCGAGCATGAGCTA
CAGAATTGCAAAAGGAAATTGATGCTCATCTGGAAAAGATCTAAGCCAGT
ACCTCAACTCCGTTTACCGTCAGCTGACTAGGTAGGATAGTCCACTGAGC
TCTCCAAGCACGCCAATACCAGCTCGGAAGGATATTTGACTGGAGATCCG
GCGTCATGACATCTATGCAAGGTATCAGGATTGATCCAGACAGGACTGAA
GTCGAACGGGGTTGTGGCTGGCATGAGGCCTGTCGCGCGCGTATCTACTC
GAGGCTCTTGCTAC
FMO07428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brf-RB | 2262 | CG31256-RB | 175..1273 | 8..1095 | 5080 | 98.1 | Plus |
| Brf-RA | 2975 | CG31256-RA | 175..1273 | 8..1095 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17390660..17391030 | 450..80 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 17376836..17377055 | 924..704 | 1055 | 99.5 | Minus |
| 3R | 32079331 | 3R | 17377117..17377267 | 705..555 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17390496..17390600 | 555..451 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 17391090..17391163 | 81..8 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 17376616..17376771 | 1079..933 | 330 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:57 has no hits.
FMO07428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:50 Download gff for
FMO07428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 162..1261 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:49 Download gff for
FMO07428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 167..1266 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:16 Download gff for
FMO07428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brf-RA | 167..1266 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:16 Download gff for
FMO07428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17376827..17377053 | 706..932 | 99 | <- | Minus |
| 3R | 17377117..17377266 | 556..705 | 100 | <- | Minus |
| 3R | 17390496..17390600 | 451..555 | 100 | <- | Minus |
| 3R | 17390660..17391028 | 82..450 | 100 | <- | Minus |
| 3R | 17391090..17391167 | 1..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:49 Download gff for
FMO07428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13202549..13202775 | 706..932 | 99 | <- | Minus |
| arm_3R | 13202839..13202988 | 556..705 | 100 | <- | Minus |
| arm_3R | 13216218..13216322 | 451..555 | 100 | <- | Minus |
| arm_3R | 13216382..13216750 | 82..450 | 100 | <- | Minus |
| arm_3R | 13216812..13216889 | 1..81 | 95 | | Minus |
