FMO07429.5prime Sequence
1240 bp (1066 high quality bases) assembled on 2008-10-22
> FMO07429.5prime
CCTATACGAAGTTATCAGTCGACATGGGTCTATCGGATATACCAGCCAAC
TATATGCAGGGCAGCCATCCGCACCTAACTCTCCATCCGCAGCAGCAGCA
CCACCAGAATCAGCAGCACTTGCAGCATCTGCAACAGATGCAGCAGCTGC
ACAACGCCATGCCCACTCCCGCCCAGCAGGCCGCCCAGGTCCTGGCCATG
GAGTCCAACGAGCTGCTCATGAGCACCAAGGACAAGCTCTCTAGCAAGAA
GAAAATGCACTTGCTCAAGAAGATCAAGAAGCGCTTTGGATTGGTTCGCC
GCTCACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTC
CACTCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGC
CCGTCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGG
TTCGCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAAC
TGGAACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCT
GGAGGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTG
GCTTCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATA
CTTTACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAA
CGAGGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGT
GGACGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGAT
TCTCGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCAC
TGTGCCCGCCCAGCAACAGCAATGCCCCAGCCAGCTGCCAATGCCTCCTC
CGCCCTGAATTCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGG
ACACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCC
TGCAATCCCTGCACTTGCAGGAAACGTGGAAGCGTGGCTAGCGTAGAAGG
CGGCCATTGCTCTGATTGGCAATGACTGCCTCCTCTGCCCTACAATGCAC
GAACAACTGATCATGTCTTCCAAAACCAAGACGGAATTGCCGCTCTCCCA
GATCCTTGGCTCTCCTACGACTGAACTCGCAGGATTGTTCCTGCCTCCAT
TCCATGTGGGGAACTGATATGTGCGAGTCCTAACGACTGA
FMO07429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neur-RB | 3989 | CG11988-RB | 282..1382 | 23..1111 | 5180 | 98.6 | Plus |
| neur-RA | 3992 | CG11988-RA | 282..1382 | 23..1111 | 5180 | 98.6 | Plus |
| neur-RE | 3381 | CG11988-RE | 317..1146 | 294..1111 | 3825 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9023032..9023846 | 1098..294 | 3615 | 98.5 | Minus |
| 3R | 32079331 | 3R | 9033179..9033450 | 294..23 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:55 has no hits.
FMO07429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:48 Download gff for
FMO07429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RB | 272..1378 | 16..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:47 Download gff for
FMO07429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 276..1382 | 16..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:20 Download gff for
FMO07429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neur-RA | 276..1382 | 16..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:20 Download gff for
FMO07429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9023017..9023845 | 295..1111 | 98 | <- | Minus |
| 3R | 9033179..9033456 | 16..294 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:47 Download gff for
FMO07429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4848739..4849567 | 295..1111 | 98 | <- | Minus |
| arm_3R | 4858901..4859178 | 16..294 | 98 | | Minus |
