FMO07431.5prime Sequence
1225 bp (1022 high quality bases) assembled on 2008-10-22
> FMO07431.5prime
CAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTT
AATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAA
ATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAA
TGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAA
CTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAA
GGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAG
TCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACC
AAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTG
GGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACG
GCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTG
GCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGT
GCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGA
AGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCAC
AAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCA
TGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATC
ATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCC
AATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGC
ACTCGAAAAGCTGAAGTGATGTGCGAGGAGGCGCTGTGCGTCATCTCTCT
GTAGAACAGCAGCCGAAACCCTAATATAGCTGATCTCCACAGTGGGGATC
ATTGAAAGCACAACGATAGATTTCATAAAATACTCATGCCACCGATGTGA
TGGAAACCTCCGGCTGCCAAATATGATCCACAACACATTCAATTTGATAG
CGGAGGCATTTCGTGGCGCTCGCACACACCAATTCCACCAATTGACAACA
GGGAACGCGTGAAATGAGCGCAGCTTCTAGACCTCGTTGGCCGCGGCCAG
GTAATGGCTTAATCTAACTAGCTAACTAATCCAATGCTAGGATCTGTCAT
GACATGGCGTGATCTCACAATAAAA
FMO07431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RF | 3856 | CG12537-RF | 607..1728 | 9..1119 | 5120 | 98 | Plus |
| rdx-RE | 4159 | CG12537-RE | 1804..2925 | 9..1119 | 5120 | 98 | Plus |
| rdx-RB | 2311 | CG12537-RB | 626..1747 | 9..1119 | 5120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13969909..13970206 | 666..369 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 13969608..13969790 | 845..663 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 13970278..13970440 | 370..208 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 13970505..13970634 | 211..82 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 13970950..13971029 | 88..9 | 400 | 100 | Minus |
| 3R | 32079331 | 3R | 13969400..13969541 | 979..844 | 395 | 95.1 | Minus |
| 3R | 32079331 | 3R | 13969248..13969330 | 1065..984 | 255 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:00 has no hits.
FMO07431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:31 Download gff for
FMO07431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 595..1703 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:32 Download gff for
FMO07431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RB | 616..1724 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:52 Download gff for
FMO07431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RB | 616..1724 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:52 Download gff for
FMO07431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13969397..13969539 | 846..983 | 94 | <- | Minus |
| 3R | 13969608..13969786 | 667..845 | 100 | <- | Minus |
| 3R | 13969909..13970204 | 371..666 | 100 | <- | Minus |
| 3R | 13970278..13970439 | 209..370 | 100 | <- | Minus |
| 3R | 13970508..13970629 | 87..208 | 100 | <- | Minus |
| 3R | 13970952..13971039 | 1..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:32 Download gff for
FMO07431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9796000..9796161 | 209..370 | 100 | <- | Minus |
| arm_3R | 9796230..9796351 | 87..208 | 100 | <- | Minus |
| arm_3R | 9795631..9795926 | 371..666 | 100 | <- | Minus |
| arm_3R | 9795119..9795261 | 846..983 | 94 | <- | Minus |
| arm_3R | 9796674..9796761 | 1..86 | 96 | | Minus |
| arm_3R | 9795330..9795508 | 667..845 | 100 | <- | Minus |
